Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_651.1_50996
Locus scaffold651.1 : 38791 ... 49127 : -
To GenomeBrowser scaffold651.1:38791..49127
Genes list of scaffold scaffold651.1
Synonym pfu_aug2.0_4539.1_32678

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_651.1_50996.t1 2 1 p450 58 137 0.0 175.4 2.1e-09 3.1e-05 22.6
pfu_aug1.0_651.1_50996.t1 2 2 p450 146 276 0.0 175.4 0.0 3.50325e-44 151.1

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
mantle 1

Transcript
Transcript IDpfu_aug1.0_651.1_50996.t1
Definition-
>pfu_aug1.0_651.1_50996.t1
gacaatggaatatctagattccatcattggacttatcagtctccgtacaacacttgtggggtccattgtaggaatactaa
cctaccagctatacaataaactaaagtacaagtcaccaccaggaccatgggctcttcctctaatagggaattacaaacgc
gacctatttacagaaggtggcaaagatatagcatttgctccctacagtgccacatggaaattccaaaagaaagttgctgg
taaagcactcaggtactacatgcaaggaaccaatctggaggacatgatcaacgatgtctgcgagaaagtgttcgaacgga
tgtcgaaagaaacagaaccttctcacgtcaatgaatacatcaataagctcgtcattcacatgctctttaacatgtgcttc
ggtcgaaaaattgtttttgtgtatgatacagaaaagggcaaatctccaagtgcatcagacagacctaacctttgctttac
tgaagcctgcattatggaaacaatgagaatgggagctgtagctggtattggtgtgccacattctaccctatgtgactcca
gtgttggtggctatgatattccaaaaggaacgatggtttttattaaccattgggctctccataatgattcaaacttttgg
aaagacgtggacaagtttgatccataccgctacttgacaaaggagggcaaaatggacatgaaacctgacagttggctgcc
tttctcagctggcagacgggtctgtctgggggaaccagttgcgagaacagagctgctgctcatagccgcaaatttgttac
agactttccgcttcaaagcgccatctggtgtaattcatgaggcacaagctcaatttgcaggtccaggatttgaagttcca
gagccttataaagtcgtggtcgagaaaagaaatcattga

Protein
Protein IDpfu_aug1.0_651.1_50996.t1
Definition-
>pfu_aug1.0_651.1_50996.t1
TMEYLDSIIGLISLRTTLVGSIVGILTYQLYNKLKYKSPPGPWALPLIGNYKRDLFTEGGKDIAFAPYSATWKFQKKVAG
KALRYYMQGTNLEDMINDVCEKVFERMSKETEPSHVNEYINKLVIHMLFNMCFGRKIVFVYDTEKGKSPSASDRPNLCFT
EACIMETMRMGAVAGIGVPHSTLCDSSVGGYDIPKGTMVFINHWALHNDSNFWKDVDKFDPYRYLTKEGKMDMKPDSWLP
FSAGRRVCLGEPVARTELLLIAANLLQTFRFKAPSGVIHEAQAQFAGPGFEVPEPYKVVVEKRNH

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495