Gene
| Gene Model ID | pfu_aug1.0_652.1_15170 |
|---|---|
| Locus | scaffold652.1 : 3312 ... 23095 : - |
| To GenomeBrowser | scaffold652.1:3312..23095 |
| Genes list of scaffold | scaffold652.1 |
| Synonym | pfu_aug2.0_206.1_20431 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | gonadotropin-releasing hormone receptor |
| Description | BLASTP top hit to Q2V2K5.1 [Octopus vulgaris] |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-GnRH-R-like B |
| Description | Reciprocal BLASTP best hit to NCBI Accession BAE66647 (Octopus vulgaris) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_652.1_15170.t1 | 1 | 1 | 7TM_GPCR_Srsx | 50 | 152 | 5.2e-07 | 29.0 | 2.8e-10 | 6.9e-07 | 28.6 |
| pfu_aug1.0_652.1_15170.t1 | 1 | 1 | 7TM_GPCR_Srx | 50 | 169 | 7.7e-07 | 28.4 | 4.0e-10 | 1.0e-06 | 28.1 |
| pfu_aug1.0_652.1_15170.t1 | 1 | 1 | 7tm_1 | 55 | 173 | 2.4e-25 | 89.1 | 1.5e-28 | 3.6e-25 | 88.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_652.1_15170.t1 | gi|122003017|sp|Q2V2K5.1|GNRHR_OCTVU | Gonadotropin-releasing hormone receptor [Octopus vulgaris] | 2.0e-40 |
Transcript
| Transcript ID | pfu_aug1.0_652.1_15170.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_652.1_15170.t1 atggagctcaatttgacatcgaactattctatatggaatgaaactattacaccgtacagcagcgccaatcacacggatgt acagcatgttcccccaagtttcgacaatgcgtccatggtgcggactatattactaagtgtccttttcttaatttctttca ttgggaatactgcgacattattacagatgtacagggttcgaaaaagacgctcaacaataaatattttgattgtaaattta gcaatagcagatttgattgtgacattttttgcaatggcagcggaagcaatttggcaaacaacagtccagtggctagcagg gaattcagtgtgtaagctagtgcggtttatacaggggtttggattcctattatccacctatgtgaccgtggtgatcagcc tggaccggtgttgtgttattttggaccctatgagtagaaataaagccccacagcgtgtacgggttatggtggccgtgtcc tggttcctaagtgccttgtttagcattccgcagggatatggtcattatccatatttgtcataa |
|
Protein
| Protein ID | pfu_aug1.0_652.1_15170.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_652.1_15170.t1 MELNLTSNYSIWNETITPYSSANHTDVQHVPPSFDNASMVRTILLSVLFLISFIGNTATLLQMYRVRKRRSTINILIVNL AIADLIVTFFAMAAEAIWQTTVQWLAGNSVCKLVRFIQGFGFLLSTYVTVVISLDRCCVILDPMSRNKAPQRVRVMVAVS WFLSALFSIPQGYGHYPYLS |
|