pfu_aug1.0_6523.1_45457: Genome browser

Gene

Gene Model ID	pfu_aug1.0_6523.1_45457
Locus	scaffold6523.1 : 6136 ... 11415 : +
To GenomeBrowser	scaffold6523.1:6136..11415
Genes list of scaffold	scaffold6523.1
Synonym	pfu_aug2.0_2.1_06699

Manual annotation

Study field	Biomineralization
Gene name	PfCHS1 like protein
Description	chitin synthase, best hit to BLAST BAF73720.1
mRNA evidence

Study field	Biomineralization
Gene name	Chitin synthase like protein
Description	Chitin synthase like protein, hit to BLAST (NCBI, BAF73720.1)
mRNA evidence

Hmmer Search for Pfam

query	Total	ID	Target	From	To	Eval	Score	cEval	iEval	Score
pfu_aug1.0_6523.1_45457.t1	1	1	Glyco_tranf_2_3	448	611	9.2e-12	45.2	6.7e-15	2.0e-11	44.1
pfu_aug1.0_6523.1_45457.t1	2	1	Chitin_synth_2	461	686	9.3e-31	106.7	4.7e-31	1.4e-27	96.3
pfu_aug1.0_6523.1_45457.t1	1	1	Glyco_trans_2_3	462	674	1.0e-15	57.9	1.2e-18	3.6e-15	56.1
pfu_aug1.0_6523.1_45457.t1	2	2	Chitin_synth_2	709	807	9.3e-31	106.7	0.00054	1.6	7.0

Expression profile

(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries	EST count
>Embryonic/Larval stages
mix	3
egg-Dshape	1
trochophore	2
>Adult tissues
Dshape	1

Transcript

Transcript ID	pfu_aug1.0_6523.1_45457.t1
Definition	-
>pfu_aug1.0_6523.1_45457.t1 atggacatggctcgctgcctacttaacctgtgtggcatattcaccgtacccgccttcctcaagaccatcagcacagccat ggacggctcactgcctggtatcaagagattcacattggcagtcctcaacggtatagctttcctgatacagtttgggaacc tcgctgccaccactatgttcagcctacctctaagtgaagatgagaagcgtgatttgctcaaagaagtcatagggaacaca gaaggttctgctattacatctactagttcaaacattacacattcaatagaacgtccaaatcctacatttgggaacagaat catgtgggaaattcctgtctctttgtttttaatttcgatatcatactgggaaaattatgtttcttccgacttttctattt gctcattgaagataccattgttggaatggaagaaacaactacacagtgtgagacaacgattatacatttttgccggtatc tggaagatcggttggacaatggtgtttgctgtactacttctgcctggatttagttttaatttggaattcactggggatca tcatgtcaatgttgagaaatcattgacgacaccttccccaagattacccgaattacctccgattctaacacaaccactgc caactgtagctcgaaattttgtagaagacatggaaaatatgtctaccacaacgcttgcaacgactactaatcaatcaaac agcacattagtcggcggcggcagggcttttgtcaaacgttcaatatccgacgtaattaacaatgctatatcaaagggaga cttttccagtattttgaacctgaccgaggacagcttacctcgccgaaggacaccgtcacctttacctgaaggccttacca ctacgactacggaaccgaagcccacaaaacccagtaattctgataaatcgaccagcaacccctcgtccctttatataatt gagttacccgagtcggtaaaggagaatttccagcgttacggtcccttttctgtacacgagcgtcagatgcagcttggccc gccgatacgaactcccacaccttatggaggacgactcacgtggaaactcccgggagggacccgactcttggtacacctca aagacaaacataaaatacgacacaagaaacgttggtcacaggtgatgtacatgtattacttgttgggctataggatcctt gcacaacccgaaaacttattacatcgggaaagcagtcgtagtgagacgccacacagcgagtctgaccgcgtcaaactcac cgattcccagctccgtcatcgacgccaagcgtcacacttcacacgaagcgtcatcttcaactataccacggaggaggttc atacacaggcagagaatactttcattttgacgttggacggtgacgtagatttcaagccagatgcagttcgtttgttgata gatcgtcttaagaagaataagaaggttggggcagcatgtggtcgtatccatcctattggttctggacctattttatggta tcaagaatttgagtatgctataggacattggcttcagaaagcaacagagcacgtgtttgggtgtgtcctctgtgccccag ggtgcttcagtctgttccgtggttccgctctgatggacgataacgtggccaggacgtacgctatccgggcatctgaggct ggacactatgtacagtatgaccaaggtgaagatcgatggctcagtaccctactcttacaacaaggttacagaatcgatta ctgcgcagccgcagacgctctgacccatgcaccggaaacattctcggagttttttaaccagagacgtcgttggggaccat cgacactggcgaacatcgccgacctacttggtgactggaagaacaccgtaaggcttaatgacaacatcagcacgccctat gttctctatcagttcctcttactcgtctctacaatcctcggtcctgccacagtgttacttatgatggcaggggccttcac catcgtcttcaaaacatccattataagctcctacgccatcgccttggtcccgccaatccttttcattatcatctgcacgt atgccaaaccatcgactcagatcactttagctacgattctaagcgcatgctatgcaataatcatgactgtagttttagtc ggcactgtagggaccgcaatagaaggctcattgacaagtcctaacgtcattttcttgattatgttagtattcatattctt tgttgctgcgttgatgcatccagaagagtttgcgtgtgtaatacctggagctctgtattttatatgtattccgactggat accttattttaacaatatactacctctgcaacctgcatattgtttcatggggtacgagagaagtaccaaagcgaaagtcg aaagaacaggtgcttgcagaaaaacgggcggaagaagagaaaaagcgaaagaaggaacagcgcaagggatttctgggttg gcttggatttagtggtattatgaatgaaatagttgaaatgtttaaacaattcagaaccatgaccttatcgaactcggaga agaaatctcaaactgatgcgctgctggaggaactgatatacgagcttcgtcagacaagggatcagaaagcgccacctcga cacaggtcctcctctacaatgacgcacgacactaaacaggaaactatatcggagatcgtcccatctcaggcagctgatgg cgactctccacaagtcaatgatggtgtgcccgcgtggcttaaaaacgaggatcctaacaacccgggctggctgggtgatc ctgtctgcggagacggcccagtcaaacagctcgaagacagagaaacgatattctggaagcagctactgcgaaaatacttg agtcctattagcgaggacagagttcaccaggagaaggtagcggccgacttgaagagtctgaggaacaacgtggtgttcgg gttcttcatgtccagcgctttgtggatcgctcttacaatgcagcttcagttgttacaagatgactttaaagatacagcac tgtttatcaagataccccattttgaccccggtaagaaggatctgacgtttgagccgctaggtatggttttccttgctctg ttctcgtctatcttactcttccagtttataggcatgttgtcacacagatgggggaccatactacacgtgctatctataac agaggtgtcgtgtagccagaaattcacagagagatacaaggtccaggagattatagctaaggctatggagctacagaggg tcagtaacatagagaacgaaccagagcctgactatgatgatcctatacctgattatgacgacgacgatgaatttgacgat gatgaagaaactttgtcttccgcatatacagacgcttctttatcaactatcattagtttctcaaagccaccttcttatca ttcaaatgacgttgctaagaaatcaaactttagacgcagaaatagtgcaattttcaatcgtagaggattggctacgggtc ggacacttcgcaaggctttcgaacgccgctatcggaatcagttacgtcgagaaaagagtggcgaatccaatgacagtgaa ggggctctcgcagcgggatttgataatgtgtaa

Transcript ID

pfu_aug1.0_6523.1_45457.t1

Definition

>pfu_aug1.0_6523.1_45457.t1
atggacatggctcgctgcctacttaacctgtgtggcatattcaccgtacccgccttcctcaagaccatcagcacagccat
ggacggctcactgcctggtatcaagagattcacattggcagtcctcaacggtatagctttcctgatacagtttgggaacc
tcgctgccaccactatgttcagcctacctctaagtgaagatgagaagcgtgatttgctcaaagaagtcatagggaacaca
gaaggttctgctattacatctactagttcaaacattacacattcaatagaacgtccaaatcctacatttgggaacagaat
catgtgggaaattcctgtctctttgtttttaatttcgatatcatactgggaaaattatgtttcttccgacttttctattt
gctcattgaagataccattgttggaatggaagaaacaactacacagtgtgagacaacgattatacatttttgccggtatc
tggaagatcggttggacaatggtgtttgctgtactacttctgcctggatttagttttaatttggaattcactggggatca
tcatgtcaatgttgagaaatcattgacgacaccttccccaagattacccgaattacctccgattctaacacaaccactgc
caactgtagctcgaaattttgtagaagacatggaaaatatgtctaccacaacgcttgcaacgactactaatcaatcaaac
agcacattagtcggcggcggcagggcttttgtcaaacgttcaatatccgacgtaattaacaatgctatatcaaagggaga
cttttccagtattttgaacctgaccgaggacagcttacctcgccgaaggacaccgtcacctttacctgaaggccttacca
ctacgactacggaaccgaagcccacaaaacccagtaattctgataaatcgaccagcaacccctcgtccctttatataatt
gagttacccgagtcggtaaaggagaatttccagcgttacggtcccttttctgtacacgagcgtcagatgcagcttggccc
gccgatacgaactcccacaccttatggaggacgactcacgtggaaactcccgggagggacccgactcttggtacacctca
aagacaaacataaaatacgacacaagaaacgttggtcacaggtgatgtacatgtattacttgttgggctataggatcctt
gcacaacccgaaaacttattacatcgggaaagcagtcgtagtgagacgccacacagcgagtctgaccgcgtcaaactcac
cgattcccagctccgtcatcgacgccaagcgtcacacttcacacgaagcgtcatcttcaactataccacggaggaggttc
atacacaggcagagaatactttcattttgacgttggacggtgacgtagatttcaagccagatgcagttcgtttgttgata
gatcgtcttaagaagaataagaaggttggggcagcatgtggtcgtatccatcctattggttctggacctattttatggta
tcaagaatttgagtatgctataggacattggcttcagaaagcaacagagcacgtgtttgggtgtgtcctctgtgccccag
ggtgcttcagtctgttccgtggttccgctctgatggacgataacgtggccaggacgtacgctatccgggcatctgaggct
ggacactatgtacagtatgaccaaggtgaagatcgatggctcagtaccctactcttacaacaaggttacagaatcgatta
ctgcgcagccgcagacgctctgacccatgcaccggaaacattctcggagttttttaaccagagacgtcgttggggaccat
cgacactggcgaacatcgccgacctacttggtgactggaagaacaccgtaaggcttaatgacaacatcagcacgccctat
gttctctatcagttcctcttactcgtctctacaatcctcggtcctgccacagtgttacttatgatggcaggggccttcac
catcgtcttcaaaacatccattataagctcctacgccatcgccttggtcccgccaatccttttcattatcatctgcacgt
atgccaaaccatcgactcagatcactttagctacgattctaagcgcatgctatgcaataatcatgactgtagttttagtc
ggcactgtagggaccgcaatagaaggctcattgacaagtcctaacgtcattttcttgattatgttagtattcatattctt
tgttgctgcgttgatgcatccagaagagtttgcgtgtgtaatacctggagctctgtattttatatgtattccgactggat
accttattttaacaatatactacctctgcaacctgcatattgtttcatggggtacgagagaagtaccaaagcgaaagtcg
aaagaacaggtgcttgcagaaaaacgggcggaagaagagaaaaagcgaaagaaggaacagcgcaagggatttctgggttg
gcttggatttagtggtattatgaatgaaatagttgaaatgtttaaacaattcagaaccatgaccttatcgaactcggaga
agaaatctcaaactgatgcgctgctggaggaactgatatacgagcttcgtcagacaagggatcagaaagcgccacctcga
cacaggtcctcctctacaatgacgcacgacactaaacaggaaactatatcggagatcgtcccatctcaggcagctgatgg
cgactctccacaagtcaatgatggtgtgcccgcgtggcttaaaaacgaggatcctaacaacccgggctggctgggtgatc
ctgtctgcggagacggcccagtcaaacagctcgaagacagagaaacgatattctggaagcagctactgcgaaaatacttg
agtcctattagcgaggacagagttcaccaggagaaggtagcggccgacttgaagagtctgaggaacaacgtggtgttcgg
gttcttcatgtccagcgctttgtggatcgctcttacaatgcagcttcagttgttacaagatgactttaaagatacagcac
tgtttatcaagataccccattttgaccccggtaagaaggatctgacgtttgagccgctaggtatggttttccttgctctg
ttctcgtctatcttactcttccagtttataggcatgttgtcacacagatgggggaccatactacacgtgctatctataac
agaggtgtcgtgtagccagaaattcacagagagatacaaggtccaggagattatagctaaggctatggagctacagaggg
tcagtaacatagagaacgaaccagagcctgactatgatgatcctatacctgattatgacgacgacgatgaatttgacgat
gatgaagaaactttgtcttccgcatatacagacgcttctttatcaactatcattagtttctcaaagccaccttcttatca
ttcaaatgacgttgctaagaaatcaaactttagacgcagaaatagtgcaattttcaatcgtagaggattggctacgggtc
ggacacttcgcaaggctttcgaacgccgctatcggaatcagttacgtcgagaaaagagtggcgaatccaatgacagtgaa
ggggctctcgcagcgggatttgataatgtgtaa

Protein

Protein ID	pfu_aug1.0_6523.1_45457.t1
Definition	-
>pfu_aug1.0_6523.1_45457.t1 MDMARCLLNLCGIFTVPAFLKTISTAMDGSLPGIKRFTLAVLNGIAFLIQFGNLAATTMFSLPLSEDEKRDLLKEVIGNT EGSAITSTSSNITHSIERPNPTFGNRIMWEIPVSLFLISISYWENYVSSDFSICSLKIPLLEWKKQLHSVRQRLYIFAGI WKIGWTMVFAVLLLPGFSFNLEFTGDHHVNVEKSLTTPSPRLPELPPILTQPLPTVARNFVEDMENMSTTTLATTTNQSN STLVGGGRAFVKRSISDVINNAISKGDFSSILNLTEDSLPRRRTPSPLPEGLTTTTTEPKPTKPSNSDKSTSNPSSLYII ELPESVKENFQRYGPFSVHERQMQLGPPIRTPTPYGGRLTWKLPGGTRLLVHLKDKHKIRHKKRWSQVMYMYYLLGYRIL AQPENLLHRESSRSETPHSESDRVKLTDSQLRHRRQASHFTRSVIFNYTTEEVHTQAENTFILTLDGDVDFKPDAVRLLI DRLKKNKKVGAACGRIHPIGSGPILWYQEFEYAIGHWLQKATEHVFGCVLCAPGCFSLFRGSALMDDNVARTYAIRASEA GHYVQYDQGEDRWLSTLLLQQGYRIDYCAAADALTHAPETFSEFFNQRRRWGPSTLANIADLLGDWKNTVRLNDNISTPY VLYQFLLLVSTILGPATVLLMMAGAFTIVFKTSIISSYAIALVPPILFIIICTYAKPSTQITLATILSACYAIIMTVVLV GTVGTAIEGSLTSPNVIFLIMLVFIFFVAALMHPEEFACVIPGALYFICIPTGYLILTIYYLCNLHIVSWGTREVPKRKS KEQVLAEKRAEEEKKRKKEQRKGFLGWLGFSGIMNEIVEMFKQFRTMTLSNSEKKSQTDALLEELIYELRQTRDQKAPPR HRSSSTMTHDTKQETISEIVPSQAADGDSPQVNDGVPAWLKNEDPNNPGWLGDPVCGDGPVKQLEDRETIFWKQLLRKYL SPISEDRVHQEKVAADLKSLRNNVVFGFFMSSALWIALTMQLQLLQDDFKDTALFIKIPHFDPGKKDLTFEPLGMVFLAL FSSILLFQFIGMLSHRWGTILHVLSITEVSCSQKFTERYKVQEIIAKAMELQRVSNIENEPEPDYDDPIPDYDDDDEFDD DEETLSSAYTDASLSTIISFSKPPSYHSNDVAKKSNFRRRNSAIFNRRGLATGRTLRKAFERRYRNQLRREKSGESNDSE GALAAGFDNV

Protein ID

pfu_aug1.0_6523.1_45457.t1

Definition

>pfu_aug1.0_6523.1_45457.t1
MDMARCLLNLCGIFTVPAFLKTISTAMDGSLPGIKRFTLAVLNGIAFLIQFGNLAATTMFSLPLSEDEKRDLLKEVIGNT
EGSAITSTSSNITHSIERPNPTFGNRIMWEIPVSLFLISISYWENYVSSDFSICSLKIPLLEWKKQLHSVRQRLYIFAGI
WKIGWTMVFAVLLLPGFSFNLEFTGDHHVNVEKSLTTPSPRLPELPPILTQPLPTVARNFVEDMENMSTTTLATTTNQSN
STLVGGGRAFVKRSISDVINNAISKGDFSSILNLTEDSLPRRRTPSPLPEGLTTTTTEPKPTKPSNSDKSTSNPSSLYII
ELPESVKENFQRYGPFSVHERQMQLGPPIRTPTPYGGRLTWKLPGGTRLLVHLKDKHKIRHKKRWSQVMYMYYLLGYRIL
AQPENLLHRESSRSETPHSESDRVKLTDSQLRHRRQASHFTRSVIFNYTTEEVHTQAENTFILTLDGDVDFKPDAVRLLI
DRLKKNKKVGAACGRIHPIGSGPILWYQEFEYAIGHWLQKATEHVFGCVLCAPGCFSLFRGSALMDDNVARTYAIRASEA
GHYVQYDQGEDRWLSTLLLQQGYRIDYCAAADALTHAPETFSEFFNQRRRWGPSTLANIADLLGDWKNTVRLNDNISTPY
VLYQFLLLVSTILGPATVLLMMAGAFTIVFKTSIISSYAIALVPPILFIIICTYAKPSTQITLATILSACYAIIMTVVLV
GTVGTAIEGSLTSPNVIFLIMLVFIFFVAALMHPEEFACVIPGALYFICIPTGYLILTIYYLCNLHIVSWGTREVPKRKS
KEQVLAEKRAEEEKKRKKEQRKGFLGWLGFSGIMNEIVEMFKQFRTMTLSNSEKKSQTDALLEELIYELRQTRDQKAPPR
HRSSSTMTHDTKQETISEIVPSQAADGDSPQVNDGVPAWLKNEDPNNPGWLGDPVCGDGPVKQLEDRETIFWKQLLRKYL
SPISEDRVHQEKVAADLKSLRNNVVFGFFMSSALWIALTMQLQLLQDDFKDTALFIKIPHFDPGKKDLTFEPLGMVFLAL
FSSILLFQFIGMLSHRWGTILHVLSITEVSCSQKFTERYKVQEIIAKAMELQRVSNIENEPEPDYDDPIPDYDDDDEFDD
DEETLSSAYTDASLSTIISFSKPPSYHSNDVAKKSNFRRRNSAIFNRRGLATGRTLRKAFERRYRNQLRREKSGESNDSE
GALAAGFDNV

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OIST Marine Genomics Unit since 2008