Gene
| Gene Model ID | pfu_aug1.0_6523.1_45458 |
|---|---|
| Locus | scaffold6523.1 : 14216 ... 20326 : + |
| To GenomeBrowser | scaffold6523.1:14216..20326 |
| Genes list of scaffold | scaffold6523.1 |
| Synonym | pfu_aug2.0_2.1_06700 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6523.1_45458.t1 | 1 | 1 | UPF0515 | 51 | 182 | 1.5e-29 | 102.9 | 1.0e-32 | 1.9e-29 | 102.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6523.1_45458.t1 | gi|344283343|ref|XP_003413431.1| | PREDICTED: UPF0515 protein C19orf66 homolog [Loxodonta africana] | 2.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6523.1_45458.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6523.1_45458.t1 atgcgtcggggaaagtcgataatagatcgggattgcatcgggaatagatcggagtttaatcggattgaacgggacttggt cggcaatgtacagcgggattgcagtggaacagtggcgtcaagcacaagtcgcgagggccttcgtttacataaaaattctg tgtctaaatgccataggtgtcataggaaatataacgccttgccacgtgaggatgaatggggctggggcgagttctcatgc ccgtcatgtggaaaccatttcaatggctttgctcacatgaacaggacacagagctcttgttaccagtgtgggacccttgt ttatcccatgtccgtccgtccaccagaacgaaggagtggtcagcggcggtcagagaacacgcacagctgtacgggatgcc gaggtagaggtcggggtggtggtggtggtggtagaggtggtggtggaatgtgcgttcatccacagacaccacgtgcacgg caagttctagtgggcagtggattgcacgtaagttctggatccacagtggatagtattttgagtgatgacgtatcatcagt cagtggccgttcttctcgacctccgtctgagccgagtataccagaagatgacgaagatggacagaacggacattaa |
|
Protein
| Protein ID | pfu_aug1.0_6523.1_45458.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6523.1_45458.t1 MRRGKSIIDRDCIGNRSEFNRIERDLVGNVQRDCSGTVASSTSREGLRLHKNSVSKCHRCHRKYNALPREDEWGWGEFSC PSCGNHFNGFAHMNRTQSSCYQCGTLVYPMSVRPPERRSGQRRSENTHSCTGCRGRGRGGGGGGRGGGGMCVHPQTPRAR QVLVGSGLHVSSGSTVDSILSDDVSSVSGRSSRPPSEPSIPEDDEDGQNGH |
|