Gene
Gene Model ID | pfu_aug1.0_6523.1_45458 |
---|---|
Locus | scaffold6523.1 : 14216 ... 20326 : + |
To GenomeBrowser | scaffold6523.1:14216..20326 |
Genes list of scaffold | scaffold6523.1 |
Synonym | pfu_aug2.0_2.1_06700 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6523.1_45458.t1 | 1 | 1 | UPF0515 | 51 | 182 | 1.5e-29 | 102.9 | 1.0e-32 | 1.9e-29 | 102.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6523.1_45458.t1 | gi|344283343|ref|XP_003413431.1| | PREDICTED: UPF0515 protein C19orf66 homolog [Loxodonta africana] | 2.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_6523.1_45458.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6523.1_45458.t1 atgcgtcggggaaagtcgataatagatcgggattgcatcgggaatagatcggagtttaatcggattgaacgggacttggt cggcaatgtacagcgggattgcagtggaacagtggcgtcaagcacaagtcgcgagggccttcgtttacataaaaattctg tgtctaaatgccataggtgtcataggaaatataacgccttgccacgtgaggatgaatggggctggggcgagttctcatgc ccgtcatgtggaaaccatttcaatggctttgctcacatgaacaggacacagagctcttgttaccagtgtgggacccttgt ttatcccatgtccgtccgtccaccagaacgaaggagtggtcagcggcggtcagagaacacgcacagctgtacgggatgcc gaggtagaggtcggggtggtggtggtggtggtagaggtggtggtggaatgtgcgttcatccacagacaccacgtgcacgg caagttctagtgggcagtggattgcacgtaagttctggatccacagtggatagtattttgagtgatgacgtatcatcagt cagtggccgttcttctcgacctccgtctgagccgagtataccagaagatgacgaagatggacagaacggacattaa |
Protein
Protein ID | pfu_aug1.0_6523.1_45458.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6523.1_45458.t1 MRRGKSIIDRDCIGNRSEFNRIERDLVGNVQRDCSGTVASSTSREGLRLHKNSVSKCHRCHRKYNALPREDEWGWGEFSC PSCGNHFNGFAHMNRTQSSCYQCGTLVYPMSVRPPERRSGQRRSENTHSCTGCRGRGRGGGGGGRGGGGMCVHPQTPRAR QVLVGSGLHVSSGSTVDSILSDDVSSVSGRSSRPPSEPSIPEDDEDGQNGH |