Gene
| Gene Model ID | pfu_aug1.0_654.1_07616 |
|---|---|
| Locus | scaffold654.1 : 32946 ... 37840 : + |
| To GenomeBrowser | scaffold654.1:32946..37840 |
| Genes list of scaffold | scaffold654.1 |
| Synonym | pfu_aug2.0_1404.1_15016 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | PFMG12 |
| Description | reciprocal BLASTN best hit to DQ116439.1 Pinctada fucata mantle protein 12 (MG12) mRNA |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_654.1_07616.t1 | 1 | 1 | Kunitz_BPTI | 13 | 52 | 6.3e-15 | 55.1 | 4.9e-19 | 7.3e-15 | 54.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_654.1_07616.t1 | gi|71063306|gb|AAZ22321.1| | mantle protein 12 [Pinctada fucata] | 5.0e-37 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_654.1_07616.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_654.1_07616.t1 atgaacgttggcagtgagtgcccctactgggtgtactctcagactagatggtactacgacaaaccctccaggagatgtct gtcctttatgtacacaggctgtggaggaaatcaaaacaactttgtcacctacttatcttgtatgcaggaatgtatgatga aatatgtaccaggaggacccacgatatcaaatccttgggaaccacctactattcatgtgtaa |
|
Protein
| Protein ID | pfu_aug1.0_654.1_07616.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_654.1_07616.t1 MNVGSECPYWVYSQTRWYYDKPSRRCLSFMYTGCGGNQNNFVTYLSCMQECMMKYVPGGPTISNPWEPPTIHV |
|