Gene
| Gene Model ID | pfu_aug1.0_654.1_07617 |
|---|---|
| Locus | scaffold654.1 : 48416 ... 81899 : + |
| To GenomeBrowser | scaffold654.1:48416..81899 |
| Genes list of scaffold | scaffold654.1 |
| Synonym | pfu_aug2.0_310.1_00588 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_654.1_07617.t1 | 2 | 1 | ALS2CR8 | 41 | 251 | 0.0 | 157.7 | 0.0 | 0.0 | 157.7 |
| pfu_aug1.0_654.1_07617.t1 | 1 | 1 | SWIM | 458 | 487 | 1.3e-07 | 30.9 | 4.7e-11 | 3.5e-07 | 29.5 |
| pfu_aug1.0_654.1_07617.t1 | 2 | 2 | ALS2CR8 | 611 | 654 | 0.0 | 157.7 | 0.44 | 3300.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_654.1_07617.t1 | gi|260834499|ref|XP_002612248.1| | hypothetical protein BRAFLDRAFT_100078 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_654.1_07617.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_654.1_07617.t1 atggtcagacataattttgaggacactcttaaaagttcttgtaataacgaatattcaaatacaatgtacaaaaatcgaag acttgtcatgaatattcaaataccaatttcagacttaacatcataccgtttgtcctgggaagacaaaaaggaaggttgta ctatagaatatagtggggtgcccttcattaaccttggatatgatgtgagggagtgccagtttggacccgatcgaaacaag gccaacaaggcgaaacatgctaataaaagggacagtcaaagtattactgaccattcttacacaacaaaaggcagaaggct cattcaaccgacaaagaaagttggttgcccttccagaatttggctgaagagaattttgagattccctaacttcacgatca ctggcaatgtttcagaatggaagaggaagaagctctccaagacttttcacaaaagtccctctcttatcaacacagtggag gagttccatgtgtttctgccaacagtggatagtcatgcaggacatatcctgggacagtttgcatcccttgcacagcctgt tgatagccgagtaaaggctaagatagcacatttagtggatgaaggggtcagcaaggtatcagagatgaagaggcacatac agattttcagcaaaaatgagcttcttccttcaaatgaaacctcttcaatttctagaagatttcatcctactgacaaagat gtcagaaattatatggctctctataagcaaaaatcaaggttctcatctaatgatcaagaaaatctgaagcaaaagattag acaatggagagacactttcccagatgacaatttctatctacgtactagtcatatgcgaaaagtggctcattcgtcaacag aagcagattacaagtctaacctctctctcttaaaaaactgttctgtgtggaagaaagatgagaaatttcgagggtggttt catcatacctggatatcacaagaaaagagatgggtgaagcgtcatagaaaggattggttccatactcgtgtggcaacaac aaatggactggagaggcagcacagaaagttgaaagaagactttctctctcagacaagtgagaagtctctttcaaatttgg tgtcagtgattgtgaatcagttttgtcccagttcatatgacaggtatgttgagtacaatgtgaaaagtaccgaaaactac agggtatatgatccatcaataccaatatttctgcgaaacaaaccgaagatgctggtcactcactgtctgaacagattacc accaaaggtggaacccattcctgagaacaacatttctcaactgccaaatggggaattccatgtgaagagcattgattctg gaatggtatacatcgtcaagctggaagaatcacttccaaactgttcttgtccagactggacgagacacaaattgccatgc aaacatatgctagcaatatttaaacattttcctgcttgggattgggacttcttgccagatgtcttccggtgttgtcccca tttcaatttagatccagagctcaacacggtatgcaaactgagaccagattgttctgagcattcagctaacttcctcatgg atgatccagagaaaccaacatgctccatatcaccaccactgccacctcgtgataattgttcaagaaagatcatcaaatgc aaagagcttttgaagcacattgagtcatcaatgtacaacatgactcatgatgacctttctattgctcaagaaagattaga aattctatcatcagatttccaagaggaccaacctaaggaggatggtttacctattctgaagaaaccgacaaaacagaaaa ggaagtggaacaagtcaccactgaagcaaaagaagcaaaaagtctggcagggagtaataaatatggatagtatgagtcat cggttacatgtatctgaatgcaatgacacactgtcagtgaaacaagaagtaagcaaaatgtggatgcaaggtgagagcac ccattacattgtctccaaatgtgcgggtataaatataacagatgaagacattatatcccttagaggagatggatggctta cagaccaggttattgaaccacatgcacgaaggcttacactgtataatcctcttggagagagtcaacgtcagcagagaata atgcaacagaattggtgtcgattttatgagagaagaatgcagctgcatttggaaccattttcaacaggagactcatgggc agtaacaaatagaatgcatgcaaaacaaaaagacagttttaattgtggtgtttatgttttaatggaagaagacaaaagct ctttaaaagtcaaagacagtagttccacttcagtcagtctagataatcttgcagacagtgaacttttctataaaaatgaa gaaaagatctacactttgttatctgaaattgatctagaggggatcagtcttgtgaagagagttggcaagatgttgaattg ttgtccagaagatgtcatcaatatctatttgcccgaggtaaaatgtgaaattattatggtaaaaatatatatgaagggtt tagactag |
|
Protein
| Protein ID | pfu_aug1.0_654.1_07617.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_654.1_07617.t1 MVRHNFEDTLKSSCNNEYSNTMYKNRRLVMNIQIPISDLTSYRLSWEDKKEGCTIEYSGVPFINLGYDVRECQFGPDRNK ANKAKHANKRDSQSITDHSYTTKGRRLIQPTKKVGCPSRIWLKRILRFPNFTITGNVSEWKRKKLSKTFHKSPSLINTVE EFHVFLPTVDSHAGHILGQFASLAQPVDSRVKAKIAHLVDEGVSKVSEMKRHIQIFSKNELLPSNETSSISRRFHPTDKD VRNYMALYKQKSRFSSNDQENLKQKIRQWRDTFPDDNFYLRTSHMRKVAHSSTEADYKSNLSLLKNCSVWKKDEKFRGWF HHTWISQEKRWVKRHRKDWFHTRVATTNGLERQHRKLKEDFLSQTSEKSLSNLVSVIVNQFCPSSYDRYVEYNVKSTENY RVYDPSIPIFLRNKPKMLVTHCLNRLPPKVEPIPENNISQLPNGEFHVKSIDSGMVYIVKLEESLPNCSCPDWTRHKLPC KHMLAIFKHFPAWDWDFLPDVFRCCPHFNLDPELNTVCKLRPDCSEHSANFLMDDPEKPTCSISPPLPPRDNCSRKIIKC KELLKHIESSMYNMTHDDLSIAQERLEILSSDFQEDQPKEDGLPILKKPTKQKRKWNKSPLKQKKQKVWQGVINMDSMSH RLHVSECNDTLSVKQEVSKMWMQGESTHYIVSKCAGINITDEDIISLRGDGWLTDQVIEPHARRLTLYNPLGESQRQQRI MQQNWCRFYERRMQLHLEPFSTGDSWAVTNRMHAKQKDSFNCGVYVLMEEDKSSLKVKDSSSTSVSLDNLADSELFYKNE EKIYTLLSEIDLEGISLVKRVGKMLNCCPEDVINIYLPEVKCEIIMVKIYMKGLD |
|