Gene
| Gene Model ID | pfu_aug1.0_654.1_07619 |
|---|---|
| Locus | scaffold654.1 : 124466 ... 129952 : + |
| To GenomeBrowser | scaffold654.1:124466..129952 |
| Genes list of scaffold | scaffold654.1 |
| Synonym | pfu_aug2.0_1314.1_14952 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_654.1_07619.t1 | 3 | 1 | SRCR | 15 | 51 | 4.7e-40 | 135.9 | 5.9e-07 | 0.0044 | 17.3 |
| pfu_aug1.0_654.1_07619.t1 | 3 | 2 | SRCR | 66 | 163 | 4.7e-40 | 135.9 | 4.6e-26 | 3.4e-22 | 78.6 |
| pfu_aug1.0_654.1_07619.t1 | 2 | 1 | SRCR_2 | 84 | 105 | 7.9e-09 | 35.6 | 5.0e-07 | 0.0037 | 17.4 |
| pfu_aug1.0_654.1_07619.t1 | 3 | 3 | SRCR | 173 | 264 | 4.7e-40 | 135.9 | 4.1e-16 | 3.0e-12 | 46.7 |
| pfu_aug1.0_654.1_07619.t1 | 2 | 2 | SRCR_2 | 183 | 210 | 7.9e-09 | 35.6 | 1.4e-06 | 0.011 | 16.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_654.1_07619.t1 | gi|47550951|ref|NP_999649.1| | scavenger receptor cysteine-rich protein variant 2 precursor [Strongylocentrotus purpuratus] | 9.0e-37 |
Transcript
| Transcript ID | pfu_aug1.0_654.1_07619.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_654.1_07619.t1 atgaggtacgattacaaggtggagatcgtaatggtacgacaggtcgcgtcgagtcgttttaactgtgagggtacagagac caagcttaaggactgcagtcaccagaatagaagtcagagatgtgacacattagccagagcctctgctatatgtatgaaag aacctatgaataataatctgaaggtgtcactagctggaaatggatcatactttggtcgggttcagattacatatgacgga gtaactggcactgtgtgtgatgatgcatggtcctccagtgatgctcgtgtattatgtaagtcactcggcttcaatgatgg tgaaccaatacagaactcctattacggaccgggaactggccctgttatgatgaacggactcagttgttatggttacgaga actccatatttcagtgccgtaataatggatggatggtgtacaataatactaaatgtagcagtcatgctcacgatgcttca gtgatttgttataaagaggttcgcctttcaagaggagaccactcccatggcgtagtacaaataatggatcagtactggtc agtgctatgtggtgagggctttgatgaaaaagatgcccttgttatatgtaaacgtctgggcttccagcatggtaggagtc tgcctaaaggaacgttcggtacattctacgggcgctactccaggccaaatgtaggatgtgtcggtaatgagtccagcatt ctggattgttcatatgacaagatgagaggttgtcagagggagaattatctgggatatgctgctgtctcgtgttacaatgg atctattaactccagtatgtttgtgtattcaatatgtcgtataatttaa |
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Protein
| Protein ID | pfu_aug1.0_654.1_07619.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_654.1_07619.t1 MRYDYKVEIVMVRQVASSRFNCEGTETKLKDCSHQNRSQRCDTLARASAICMKEPMNNNLKVSLAGNGSYFGRVQITYDG VTGTVCDDAWSSSDARVLCKSLGFNDGEPIQNSYYGPGTGPVMMNGLSCYGYENSIFQCRNNGWMVYNNTKCSSHAHDAS VICYKEVRLSRGDHSHGVVQIMDQYWSVLCGEGFDEKDALVICKRLGFQHGRSLPKGTFGTFYGRYSRPNVGCVGNESSI LDCSYDKMRGCQRENYLGYAAVSCYNGSINSSMFVYSICRII |
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