Gene
| Gene Model ID | pfu_aug1.0_6559.1_31238 |
|---|---|
| Locus | scaffold6559.1 : 13085 ... 31665 : - |
| To GenomeBrowser | scaffold6559.1:13085..31665 |
| Genes list of scaffold | scaffold6559.1 |
| Synonym | pfu_aug2.0_46.1_20110 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6559.1_31238.t1 | 1 | 1 | UvrD_C | 533 | 672 | 1.5e-11 | 44.3 | 1.3e-14 | 3.9e-11 | 43.0 |
| pfu_aug1.0_6559.1_31238.t1 | 1 | 1 | UvrD_C_2 | 575 | 669 | 6.3e-08 | 32.6 | 7.3e-11 | 2.2e-07 | 30.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6559.1_31238.t1 | gi|291236641|ref|XP_002738248.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6559.1_31238.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6559.1_31238.t1 atggacacagcaaaggataaagatgaggttcaactggactctacatcagatgactgtaagaacatagtccctctttcttc agagggtaaactggtgtccaataaaacagaggtcaagcgtcgggtgcatttaactaatgactcttgccagtttttagccc agtcagctgaaggaatgaaatcattgtcttctcccatggcaatgagttttaaaatggcaggtgatgtcaataagggactg tatcccagagagaaaagacagacttgtaagaacagacctcagagtgaggaagattctgagggatggttgaaggaatcgtg tcctgatgaaacagcttcatcatcacaagaaagtacatcctacacaaaaaatgtcagtggttttacttctgctgcagaca tttacaaaactaataactcctcattactggttcatgcaccagttgctaaacccatcacatttggtaagcgaaaattaacg gaacctggtgacaatcagaagtctatcaagtctttcttttcatctccaagtaagaaactgaaacaggatattggtgcaga tgtaccaaaagataaggatcctatgatagttgatgattatcagccacaagtgattgagtatagttccccgtcgaaaatgt tctcaccaatcaagaagctggagaactctaacagtatttatatatcagatgacagcaagtctccgaggtcaagtcaggag agttccaagtcatgtgactctgtatcatccaataaaagtgcaataaagcagttgtttgatggccagaagaaatatgaaca gcaaatgaaatctgctgcaaagaagaaacagagagtgttctcattaagcgccgacggctggcgatttctcatcttatact taggatattctcagcactgccatactctacctcagtccatgacagacaatgtaactgagtgcctgaaaaaacattccaag tatacatgggctgaaactctgatcaaggaaaggcttcctgatttacttaaggatgatgtacctaatccgtggagtatgat agcagcgttggttgtgatatcagagagtgtggcagactgtcaggagataatatggtgtttatgtctaccagaatgtcagt gtaccacggtggaattactggaaaccatgtataatatcaccactctcctcttcgcctttaaactcacacacaaaaaggat gtttggagtggtatgcactatcgtttgttctatgctgtatacctgtttgagaatacatctacagcgagctatggtgattt gacctgcacaaccacaaacaaaggaggacaacagactatcgtcagatatgggaaagctgatacaagtgtgagaatgaccc atgaacaactcaggattgtcaaccacaaatgtaatccaggggagatcatcaaaattgtggcatttgcagggacagggaaa acaacaacacttgttagttacactcaacttagaccaaacctaaaatttctattagtggtttacaacaaatctgtatgtga acatgcaaagaccaaatttccttcgaacgtaacctgtaagactgggcacggcttggcatttggttatacgggaagaaact atgaatatctatttacagagagaagaaaaattaataacaagttcatcagtaagtttcctaaccttggtgagttagagaag tatgccaataaaactaacgacaacgaactcctggggaagatcaagattgtgagaacttatcaccatgccttaccctcaca tatcaacaaaatcctggccaagtcaaccaataatcttaaaactgctgatgtattattcagcaccgcacacaaagccaaag gtttagagttcagtactgtgagacttactgatgactttaatgtggaactcattcttaaacaaaatgcaggaatcccaatt ccagtattggatggacaaatggaccaggtgtcagatgagggtaacttattgtatgtagcagtaaccagggctaagcacgc ccttcagatgacggagactttactgactgttctcagagaaaatggggagagatttgaatacccagtgctgagtagctgtt tagagaataaaggaattccatttaaatgcatggaaacagactccgagtttaaaccatattctctcactctagaaaaaagg gaggttaaactgagctcaggaaaaacaacaccaaaaggaatatatggtcccacaattctttctgaagatggcggcagttt ctgtgagttgctaggagacaaggactcagaacaaagatcagggaaggaaaggacttcaagacaaagggaccatcgttgga gagtatttctggggctggatgaagatgagtttgactttgacttctatcctttctaa |
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Protein
| Protein ID | pfu_aug1.0_6559.1_31238.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6559.1_31238.t1 MDTAKDKDEVQLDSTSDDCKNIVPLSSEGKLVSNKTEVKRRVHLTNDSCQFLAQSAEGMKSLSSPMAMSFKMAGDVNKGL YPREKRQTCKNRPQSEEDSEGWLKESCPDETASSSQESTSYTKNVSGFTSAADIYKTNNSSLLVHAPVAKPITFGKRKLT EPGDNQKSIKSFFSSPSKKLKQDIGADVPKDKDPMIVDDYQPQVIEYSSPSKMFSPIKKLENSNSIYISDDSKSPRSSQE SSKSCDSVSSNKSAIKQLFDGQKKYEQQMKSAAKKKQRVFSLSADGWRFLILYLGYSQHCHTLPQSMTDNVTECLKKHSK YTWAETLIKERLPDLLKDDVPNPWSMIAALVVISESVADCQEIIWCLCLPECQCTTVELLETMYNITTLLFAFKLTHKKD VWSGMHYRLFYAVYLFENTSTASYGDLTCTTTNKGGQQTIVRYGKADTSVRMTHEQLRIVNHKCNPGEIIKIVAFAGTGK TTTLVSYTQLRPNLKFLLVVYNKSVCEHAKTKFPSNVTCKTGHGLAFGYTGRNYEYLFTERRKINNKFISKFPNLGELEK YANKTNDNELLGKIKIVRTYHHALPSHINKILAKSTNNLKTADVLFSTAHKAKGLEFSTVRLTDDFNVELILKQNAGIPI PVLDGQMDQVSDEGNLLYVAVTRAKHALQMTETLLTVLRENGERFEYPVLSSCLENKGIPFKCMETDSEFKPYSLTLEKR EVKLSSGKTTPKGIYGPTILSEDGGSFCELLGDKDSEQRSGKERTSRQRDHRWRVFLGLDEDEFDFDFYPF |
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