Gene
Gene Model ID | pfu_aug1.0_6565.1_38366 |
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Locus | scaffold6565.1 : 34746 ... 39754 : + |
To GenomeBrowser | scaffold6565.1:34746..39754 |
Genes list of scaffold | scaffold6565.1 |
Synonym | NA |
Manual annotation
Study field | Environmental Response |
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Gene name | neuropeptide Y receptor Y6 |
Description | BLASTP top hit to ABI94073.1 [Latimeria chalumnae] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6565.1_38366.t1 | 1 | 1 | 7tm_1 | 52 | 310 | 1.0e-14 | 54.3 | 1.8e-18 | 1.4e-14 | 53.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_6565.1_38366.t1 |
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Definition | - |
>pfu_aug1.0_6565.1_38366.t1 atggacaacaagatttgtcttgactggctgatacaagcgcacaactttaattcgaacgtcacccttagtgaacttaacca tgccatacttgacgacttcttctacctatttttggccaccatttttacactggctgttgggacggtgggaaatctaacat gcctcatggtgtactggaagtctataggaaagtcccgattcagaacgtatgtgctgtacatatccagcatcgacactatc tcgtgtgttgtattcacgccaactgtgataatatatctcatctcgcctcttaactatcctagcgaggctgcgtgtatatt cagtcattatgtcggagatttcaccaagctagctggaagcatggcacttttactgatagcactcgagagatgtcgacatg tgtttaaaccccacatctcaacctccagagaaggagtcaaggtcggtttcttttttgggatattttttgcatttcttgct gcatctccgaggctaaaaataatgggagtgacggaacttacaataaaggaactgaacataacagctcgaccctgtttcaa ggagaaggaattcagatataccgaatttggacgaggctacgtagtattcatcaacatggcaacttgtatattgagctctc tagcccttcttgcttccagtataagtatggtcagaactcgttccgtgccccaatttaaagttcgggaagaaatgcttccg acaaggctgcagtattcgaaaaatctgaccactatgatgtttatagccactctgaagtttactttggtcaactttccctt gagcgtctttttgatgattcgatacttggaagaggaccatgaatgcatcttgaattttttccgcggacttctgatgcatt tatttggcttccttttggttctacatctggtgcttaatccgtttatctatggatatttcgacagtagattccgtcaggaa gttggttcgctgttcttcacttttacgcgaacgcaaattgtagacactgacaatgatgaagaaaagaaggacagcttggt agcttcaattgaattccctaatgacatagaagaaaagcaagtgaaggaaggcttcaagtctattgccgaaaataaaaccg attccgaactagatgaaaaacaaggacagaaataccgcaagaagtctttaagtaaaagtttgcatggctacatcagaaaa cctaaaagaccgatgcatagaccctgcggagatctgaataaaagctttacagtcagaatatctactgacttacagtaa |
Protein
Protein ID | pfu_aug1.0_6565.1_38366.t1 |
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Definition | - |
>pfu_aug1.0_6565.1_38366.t1 MDNKICLDWLIQAHNFNSNVTLSELNHAILDDFFYLFLATIFTLAVGTVGNLTCLMVYWKSIGKSRFRTYVLYISSIDTI SCVVFTPTVIIYLISPLNYPSEAACIFSHYVGDFTKLAGSMALLLIALERCRHVFKPHISTSREGVKVGFFFGIFFAFLA ASPRLKIMGVTELTIKELNITARPCFKEKEFRYTEFGRGYVVFINMATCILSSLALLASSISMVRTRSVPQFKVREEMLP TRLQYSKNLTTMMFIATLKFTLVNFPLSVFLMIRYLEEDHECILNFFRGLLMHLFGFLLVLHLVLNPFIYGYFDSRFRQE VGSLFFTFTRTQIVDTDNDEEKKDSLVASIEFPNDIEEKQVKEGFKSIAENKTDSELDEKQGQKYRKKSLSKSLHGYIRK PKRPMHRPCGDLNKSFTVRISTDLQ |