Gene
| Gene Model ID | pfu_aug1.0_6568.1_31241 |
|---|---|
| Locus | scaffold6568.1 : 18596 ... 21948 : + |
| To GenomeBrowser | scaffold6568.1:18596..21948 |
| Genes list of scaffold | scaffold6568.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6568.1_31241.t1 | 1 | 1 | CPSF_A | 1 | 56 | 1.6e-17 | 63.5 | 3.9e-21 | 1.9e-17 | 63.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6568.1_31241.t1 | gi|301604148|ref|XP_002931705.1| | PREDICTED: splicing factor 3B subunit 3 [Xenopus (Silurana) tropicalis] | 4.99983e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6568.1_31241.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6568.1_31241.t1 atgctggtacctgttaactcgcatgaggaccttgactttttccagcacttggagatgtatatgaggtcggagcacccacc cctgtgcggtagagatcatctgtccttcagatcttattattttcctgtcaagaatgtagttgacggtgatttgtgtgaaa tgtttaattctatggatccagccaagcagaagagtgtggcagaggagcttgaccatacacccagtgaggtttcaaagaag ctggaagacattagaaccagatatgcgttttag |
|
Protein
| Protein ID | pfu_aug1.0_6568.1_31241.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6568.1_31241.t1 MLVPVNSHEDLDFFQHLEMYMRSEHPPLCGRDHLSFRSYYFPVKNVVDGDLCEMFNSMDPAKQKSVAEELDHTPSEVSKK LEDIRTRYAF |
|