Gene
| Gene Model ID | pfu_aug1.0_657.1_58177 |
|---|---|
| Locus | scaffold657.1 : 54646 ... 65865 : - |
| To GenomeBrowser | scaffold657.1:54646..65865 |
| Genes list of scaffold | scaffold657.1 |
| Synonym | pfu_aug2.0_634.1_14411 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | receptor-associated protein of the synapse (RAPSN) |
| Description | BLASTP best hit to NCBI Accession XP003440514 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_657.1_58177.t1 | 1 | 1 | Rapsyn_N | 1 | 81 | 1.0e-17 | 63.6 | 4.7e-20 | 4.9e-17 | 61.4 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 1 | TPR_11 | 11 | 71 | 4.2e-15 | 55.1 | 2.9e-06 | 0.0031 | 17.1 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 1 | TPR_1 | 12 | 34 | 2.2e-12 | 45.9 | 0.5 | 530.0 | 0.5 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 1 | TPR_12 | 13 | 70 | 3.6e-16 | 58.8 | 0.009 | 9.5 | 6.2 |
| pfu_aug1.0_657.1_58177.t1 | 6 | 1 | TPR_2 | 13 | 35 | 1.9e-14 | 52.3 | 0.013 | 14.0 | 5.9 |
| pfu_aug1.0_657.1_58177.t1 | 6 | 2 | TPR_2 | 49 | 66 | 1.9e-14 | 52.3 | 0.43 | 460.0 | 1.1 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 2 | TPR_1 | 49 | 68 | 2.2e-12 | 45.9 | 0.13 | 140.0 | 2.3 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 1 | TPR_7 | 54 | 74 | 1.6e-11 | 43.0 | 0.46 | 480.0 | 0.9 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 2 | TPR_11 | 55 | 114 | 4.2e-15 | 55.1 | 1.6e-05 | 0.017 | 14.7 |
| pfu_aug1.0_657.1_58177.t1 | 6 | 3 | TPR_2 | 87 | 114 | 1.9e-14 | 52.3 | 0.00013 | 0.14 | 12.1 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 3 | TPR_1 | 88 | 115 | 2.2e-12 | 45.9 | 0.00037 | 0.39 | 10.4 |
| pfu_aug1.0_657.1_58177.t1 | 3 | 1 | TPR_8 | 89 | 115 | 5.0e-12 | 44.6 | 0.00052 | 0.55 | 10.1 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 2 | TPR_12 | 90 | 115 | 3.6e-16 | 58.8 | 0.0077 | 8.1 | 6.4 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 2 | TPR_7 | 90 | 115 | 1.6e-11 | 43.0 | 3.7e-05 | 0.039 | 13.7 |
| pfu_aug1.0_657.1_58177.t1 | 6 | 4 | TPR_2 | 134 | 157 | 1.9e-14 | 52.3 | 5.8e-05 | 0.061 | 13.2 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 4 | TPR_1 | 134 | 156 | 2.2e-12 | 45.9 | 5.0e-05 | 0.053 | 13.1 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 3 | TPR_12 | 135 | 202 | 3.6e-16 | 58.8 | 7.3e-10 | 7.8e-07 | 28.9 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 3 | TPR_11 | 135 | 200 | 4.2e-15 | 55.1 | 4.4e-07 | 0.00047 | 19.7 |
| pfu_aug1.0_657.1_58177.t1 | 3 | 2 | TPR_8 | 135 | 156 | 5.0e-12 | 44.6 | 0.00011 | 0.11 | 12.3 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 3 | TPR_7 | 135 | 161 | 1.6e-11 | 43.0 | 0.0014 | 1.5 | 8.8 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 4 | TPR_11 | 172 | 241 | 4.2e-15 | 55.1 | 9.0e-06 | 0.0096 | 15.5 |
| pfu_aug1.0_657.1_58177.t1 | 6 | 5 | TPR_2 | 173 | 202 | 1.9e-14 | 52.3 | 0.00042 | 0.44 | 10.5 |
| pfu_aug1.0_657.1_58177.t1 | 3 | 3 | TPR_8 | 173 | 200 | 5.0e-12 | 44.6 | 5.1e-06 | 0.0054 | 16.4 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 5 | TPR_1 | 174 | 200 | 2.2e-12 | 45.9 | 4.5e-05 | 0.048 | 13.2 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 4 | TPR_7 | 176 | 200 | 1.6e-11 | 43.0 | 8.7e-05 | 0.092 | 12.5 |
| pfu_aug1.0_657.1_58177.t1 | 4 | 4 | TPR_12 | 219 | 270 | 3.6e-16 | 58.8 | 0.00023 | 0.25 | 11.3 |
| pfu_aug1.0_657.1_58177.t1 | 5 | 5 | TPR_11 | 220 | 269 | 4.2e-15 | 55.1 | 0.18 | 190.0 | 1.7 |
| pfu_aug1.0_657.1_58177.t1 | 6 | 6 | TPR_2 | 255 | 270 | 1.9e-14 | 52.3 | 0.88 | 930.0 | 0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_657.1_58177.t1 | gi|348505932|ref|XP_003440514.1| | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug1.0_657.1_58177.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_657.1_58177.t1 atgggacaaggaacaactaagcatagtttagataaaggaatgaaactttatcaagaagaaaactttgccggcgcaataag tgaatggagtaatgctttaaaacgaagtagtaagtctggtagagtggaggataaatttaatattctgggatatctttgtt ctgtgtattttgatacagggaaatatagggacgtgatattgtgtgctaaccaacaagcggagatatgtcacaaggtcaac gacagatatatgaagcaagagggattcttcaatcttgcgaggggatatgagcgactcgcaaacttcgagaaaagcatcac atactgtggaaaatgtatagaagtagggaacaaaaagaaaccggaaaactgtatcgatttagaaatattttcattcgtct gtctcgggaaggcgtacttcggattgagcgattttcataattctttaaaacatttcgaagaagcgctgattaaaagtgag aaagagaaagaaaataatatctgcataaaattcttggtgtatgaaagtctaggtatattatttgacaaactaaatgatta tgagacctctctatcatatctagaacgatgtctggatatagttcaaaccaacattgaggaattgtctaagtataagagaa ggatccaagtagatctggctttacctctattacattccgggaggttgaacgatgccatggacatgtgcgagctttccatg aaggaggcaatgcgtgttggagaccgtccagttcagggaaaatgcttgtttacattcgcggaaattcacaggaaacggaa agactatgagtttggttatctggagagtaagaccagaatggtggacctttatagaatgctgggtaatgacgagagttcac ggttcagtgatgctgaggtcactaccgtggccaatgaactggaactgttctgtggagtgtgtggagaacaaataggattg atacctgaaggtctggatccactaccttgtggtcatctgattcactcaaggtaa |
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Protein
| Protein ID | pfu_aug1.0_657.1_58177.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_657.1_58177.t1 MGQGTTKHSLDKGMKLYQEENFAGAISEWSNALKRSSKSGRVEDKFNILGYLCSVYFDTGKYRDVILCANQQAEICHKVN DRYMKQEGFFNLARGYERLANFEKSITYCGKCIEVGNKKKPENCIDLEIFSFVCLGKAYFGLSDFHNSLKHFEEALIKSE KEKENNICIKFLVYESLGILFDKLNDYETSLSYLERCLDIVQTNIEELSKYKRRIQVDLALPLLHSGRLNDAMDMCELSM KEAMRVGDRPVQGKCLFTFAEIHRKRKDYEFGYLESKTRMVDLYRMLGNDESSRFSDAEVTTVANELELFCGVCGEQIGL IPEGLDPLPCGHLIHSR |
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