Gene
| Gene Model ID | pfu_aug1.0_6601.1_24043 |
|---|---|
| Locus | scaffold6601.1 : 29809 ... 34105 : - |
| To GenomeBrowser | scaffold6601.1:29809..34105 |
| Genes list of scaffold | scaffold6601.1 |
| Synonym | pfu_aug2.0_42.1_06808 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6601.1_24043.t1 | 1 | 1 | SAM_2 | 878 | 941 | 3.9e-11 | 42.6 | 8.7e-15 | 6.5e-11 | 41.9 |
| pfu_aug1.0_6601.1_24043.t1 | 1 | 1 | SAM_1 | 880 | 940 | 1.8e-16 | 60.0 | 4.3e-20 | 3.2e-16 | 59.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6601.1_24043.t1 | gi|60360360|dbj|BAD90424.1| | mKIAA1022 protein [Mus musculus] | 3.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6601.1_24043.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6601.1_24043.t1 atgagcccatccgaaatgcgaattaaaaagtatcataagggaaaatcaagtggactggagcgttctagcagtacgcctga tttattagatggaggtagaaagcctgagcccgtgtatgccacccctattctgccaggggatggcagaagatcaagtagtg gtgctataaacaatgtatacgcaatgccaggggagaggccgaagggaccgcctccaccccctccggcagggtcgtcaact tcttcacccaaacgtcaagcccctgcaccgccgaaggggtctgatgtggtgcaaaattccaaaactgaagtagtgactat tagtactgacaaacgaagttctatatactcaaatgctaatgatggaaaagttatagacagacggaaatcagaatatgagt ccagttttagaccagggatatcggcaagtttgacagatgagccaaaaatttctactccttcacttcaacaggcaaaactt agtaatagaactcacaatagaaattcgagtcagatttcagtgcaatcgtctgactcatctggaagtaaaaattctgaaga caagccctctgtgtcatttgcagaagacaaagtgatggtaaatgcagagtctttcctacaaaaacatccaaatgctcagc tgcttgtaaccgcagaagttcacaagaaaacatctgaacgaaagccgtctgagcctgaaccagattatgatgctgaaagt gatgataacaaagaaagttcagcatcaaataattctgttactgtgataagtgtaggtggtgctagtaacaataatgctaa gaaatttacagtgaaatctgacattcctactgggtcaccgaaggaaacgatggttatccctcctcctccgtctgaaccag cacctgagcctccgaaaccttcagaaaaagagaagatcagtagtggtgcttcaactcaaagtgatcacagcagacagtcg tctatcagtgatgtaagtaatgctccaccggctcctcctccacctccagtggcgcctcctgcaccaccaccacccccgat tcaagcaccagatagggagaaaacccctcctcctgttgctgaaaacaaacccaagaaacccttgggtgtattacccacta cagatattctggccgctgtggaaaaacgcaaaacaagaatagagaatgacggtataaaaatctctgagggtccaaataaa gaggtaaaaccaagaaattcaactgacctgaggaacaaattgatcgaaaacacacaagcggcaattttagaggcagttgc gaagcgtagggcaaaacttgaacaaacatcggagacggaggttgcagatcaaatagagtcaagattgcagaaaacaaaga agttacaaacatctaaaatgtatttttcaagtgatacaattcaaaagaatgaaacaagtactgttaataaaaaggaggaa gttaaatcagaaacaaaagcaaatgcagttttcagtagtgactctattgccaagaaaaaaccgccaagtccttccccgaa aagggctccttctccgaaaaacaaaccgccaagtcctgtaccatcacagaaaaataaggcacctgttcctattcctacaa aggagaaaaaaccagcagaagttgtggttcctgtcaaggagaaatcccctgtatatgtttctcctgtcaaaaaggatgtt tctgctacttcagtgaaatctatatcgaaacaaactaactcaaagacggacactacaacctcagagaaaaaagaggatgt aaaggtcaatggtgatctcaacggtgaggactttgttgccatggcagaaaaggcacgacaagactggattaaaaagagat ccagtagtagtctgcttttgaaaacgaaaccagaagttaaatcaaaatctggagagaaaagtaaaacagatgcaccaaca tcgccaaagaagaccagcaacggaactgcagtacctccaaaaacaaacggaattgttatagaatctgctggtgtaaaggg cagtgacaagaaattcagtaagaaagctagtccgagtgcttctccagcaaaaacgacctcagcatcaaaagttgattctc gtggaattacgcccttgaaatcagctagagacactgtaatgattgcaaaatctacatcaatacgtgctagaattgctaac tttgagcaaagtggcaaaccagaaggaaatagttctaatccaacttctccgcgttctaaaataccagtgcatggagttac cacagacagtacaactactgaaacacagaaaagaagtgcattgcccccaccaccaggctttggggatgctgtacacttgg aaataattcctcccccaacaggatttagtgttactgatggtcccgagtccccgccatactcggctttccatcacgatgac tcgtcatccgtttcaacattgtcaactctgtcagatgatgctctggatgggaggccaaggcacgggtatgaagacttgat agccccgcctccacctggatttgacgataattcaggaaatgacaatattttaccgagtgtaataccacctccaccggact ttggaggttctgaagtaaaaaatgtgtcaaaacttcgttcattaggtaacaaaccttttgaatctaagccagtagaatca tggcagtgtttagatgtgttggactggctagatagccttaatatgacccagtataaaaatagctttcagcaacgttgtgt tgatggtaaaaaattagcgggccttacacgcaacgattacatacaacttggagtgactcaagttggacatagaatgaatc ttgaacgttccatcaagaaagtgtcagcaaaaaaatttagttcatga |
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Protein
| Protein ID | pfu_aug1.0_6601.1_24043.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6601.1_24043.t1 MSPSEMRIKKYHKGKSSGLERSSSTPDLLDGGRKPEPVYATPILPGDGRRSSSGAINNVYAMPGERPKGPPPPPPAGSST SSPKRQAPAPPKGSDVVQNSKTEVVTISTDKRSSIYSNANDGKVIDRRKSEYESSFRPGISASLTDEPKISTPSLQQAKL SNRTHNRNSSQISVQSSDSSGSKNSEDKPSVSFAEDKVMVNAESFLQKHPNAQLLVTAEVHKKTSERKPSEPEPDYDAES DDNKESSASNNSVTVISVGGASNNNAKKFTVKSDIPTGSPKETMVIPPPPSEPAPEPPKPSEKEKISSGASTQSDHSRQS SISDVSNAPPAPPPPPVAPPAPPPPPIQAPDREKTPPPVAENKPKKPLGVLPTTDILAAVEKRKTRIENDGIKISEGPNK EVKPRNSTDLRNKLIENTQAAILEAVAKRRAKLEQTSETEVADQIESRLQKTKKLQTSKMYFSSDTIQKNETSTVNKKEE VKSETKANAVFSSDSIAKKKPPSPSPKRAPSPKNKPPSPVPSQKNKAPVPIPTKEKKPAEVVVPVKEKSPVYVSPVKKDV SATSVKSISKQTNSKTDTTTSEKKEDVKVNGDLNGEDFVAMAEKARQDWIKKRSSSSLLLKTKPEVKSKSGEKSKTDAPT SPKKTSNGTAVPPKTNGIVIESAGVKGSDKKFSKKASPSASPAKTTSASKVDSRGITPLKSARDTVMIAKSTSIRARIAN FEQSGKPEGNSSNPTSPRSKIPVHGVTTDSTTTETQKRSALPPPPGFGDAVHLEIIPPPTGFSVTDGPESPPYSAFHHDD SSSVSTLSTLSDDALDGRPRHGYEDLIAPPPPGFDDNSGNDNILPSVIPPPPDFGGSEVKNVSKLRSLGNKPFESKPVES WQCLDVLDWLDSLNMTQYKNSFQQRCVDGKKLAGLTRNDYIQLGVTQVGHRMNLERSIKKVSAKKFSS |
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