Gene
| Gene Model ID | pfu_aug1.0_6610.1_60067 |
|---|---|
| Locus | scaffold6610.1 : 33648 ... 37835 : - |
| To GenomeBrowser | scaffold6610.1:33648..37835 |
| Genes list of scaffold | scaffold6610.1 |
| Synonym | pfu_aug2.0_890.1_01230 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6610.1_60067.t1 | 1 | 1 | Pkinase | 32 | 281 | 0.0 | 205.2 | 0.0 | 0.0 | 204.7 |
| pfu_aug1.0_6610.1_60067.t1 | 1 | 1 | Pkinase_Tyr | 35 | 277 | 2.2e-25 | 89.1 | 1.5e-28 | 3.2e-25 | 88.6 |
| pfu_aug1.0_6610.1_60067.t1 | 1 | 1 | Kinase-like | 103 | 268 | 1.1e-10 | 40.9 | 7.6e-14 | 1.6e-10 | 40.4 |
| pfu_aug1.0_6610.1_60067.t1 | 1 | 1 | Kdo | 108 | 179 | 7.0e-10 | 38.3 | 5.3e-13 | 1.1e-09 | 37.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6610.1_60067.t1 | gi|260816102|ref|XP_002602811.1| | hypothetical protein BRAFLDRAFT_273255 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 3 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6610.1_60067.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6610.1_60067.t1 atgttttctcacaacgggaataatccaaatgtctgtcagcaagagaaagagtgtaataaagcaaaagacaaggagacttt taccaagtcgtacagtgttggtccagttttaggcagcgggggattcgggacagtttattcaggtgttcgcagaaaggaca acttaccggtcgctgtcaagttgatcgccagagagaaagttgtagaatggggaaatatcaatggttctcctgtaccactg gaaatatgtttattaaaaaaagtttcaaactgtcaaggagttattaaaatgttagactggtttgaagtgaaggaaaattt cctaattgtgatggaaaaaccagagccagttcaggatttatttgactatatcacagaaaaaggtgctttagatgaagaaa ccagcaaaaacttcttcagacaaattgtggaaacaatagtgaatattcatagacaaggtgtagttcacagggacattaaa gacgaaaacatattgatagatctcaaatctggagaacttaaattaatcgactttggatctggtgcatttttaaaagacac cgtctatctcacttttgatggaacgcgtgtttatagtccccctgagtggattaagtaccacaggtatcatgggcgatcgg cgacagtgtggtcacttggtattctgttgtacgacttggtctgtggggatattccattcgaacaagatgaccaaatcatg aaggccgaagtgacgtttagaggacgtatttcaaatgaagtgaaagaccttattcgttcgtgcttatccatccgcccatc agacagaccctccttggaggacattctgaatcaccagtggcttgccactcccaagttagctgttgacaaactctcaatcc gtacaccgagttctcagaatatgagttcgacgggctcagtggacgccgagtcaatgagcagccaggagtcgatatga |
|
Protein
| Protein ID | pfu_aug1.0_6610.1_60067.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6610.1_60067.t1 MFSHNGNNPNVCQQEKECNKAKDKETFTKSYSVGPVLGSGGFGTVYSGVRRKDNLPVAVKLIAREKVVEWGNINGSPVPL EICLLKKVSNCQGVIKMLDWFEVKENFLIVMEKPEPVQDLFDYITEKGALDEETSKNFFRQIVETIVNIHRQGVVHRDIK DENILIDLKSGELKLIDFGSGAFLKDTVYLTFDGTRVYSPPEWIKYHRYHGRSATVWSLGILLYDLVCGDIPFEQDDQIM KAEVTFRGRISNEVKDLIRSCLSIRPSDRPSLEDILNHQWLATPKLAVDKLSIRTPSSQNMSSTGSVDAESMSSQESI |
|