Gene
| Gene Model ID | pfu_aug1.0_6626.1_67486 |
|---|---|
| Locus | scaffold6626.1 : 1 ... 17395 : + |
| To GenomeBrowser | scaffold6626.1:1..17395 |
| Genes list of scaffold | scaffold6626.1 |
| Synonym | pfu_aug2.0_91.1_03590 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6626.1_67486.t1 | 2 | 1 | RRM_6 | 28 | 97 | 6.9e-28 | 96.4 | 2.5e-15 | 1.2e-11 | 44.3 |
| pfu_aug1.0_6626.1_67486.t1 | 2 | 1 | RRM_1 | 30 | 96 | 7.2e-19 | 67.1 | 5.2e-14 | 2.6e-10 | 39.8 |
| pfu_aug1.0_6626.1_67486.t1 | 2 | 2 | RRM_6 | 250 | 319 | 6.9e-28 | 96.4 | 4.0e-17 | 2.0e-13 | 50.1 |
| pfu_aug1.0_6626.1_67486.t1 | 2 | 2 | RRM_1 | 252 | 316 | 7.2e-19 | 67.1 | 1.5e-09 | 7.6e-06 | 25.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6626.1_67486.t1 | gi|344246789|gb|EGW02893.1| | Heterogeneous nuclear ribonucleoprotein H, partial [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 2 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6626.1_67486.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6626.1_67486.t1 tatttcgatcaaaaaagagtgaaatggattgggtcattaaacgggcaggacctggtcagatgccaggatcaaatgaagca gtagtgaggttaagaggtttaccattcggatgttcgaaagaggaaattgctcagtttttcacagggttggagattgtgcc caatgggataatgcttccggaagacagacagggtcgcagcacgggggaggcctacgtacagtttgctacacaagagattg cggaaaatgccctacttaaacacaaggagagaatagggcacaggtacatagagatcttcaagagtagcatgcaagaggca agtggagccatgggaaatgtgagcaggattcgccccctgatgggagggtccggaatgggtggcatgaatcgtccaggacc atatgaccgtagtagccgcctcgggatgggtggaggtatgggaatggggggaggaggaggaggtggaggtatggggggag ggatgggtggatatggcatgggcagaggaggacgcaatctcaaaggtttctttgatgatgactttgatgattatggaagt ggatatggaggtggaccaggatttggtggtcctcgacgggggatgatgggaaatatgaggcagcaatcacgaggcaggat gggaggagggcaaagcatgatgggtggaggaggaggaggtggtggtggaatgggcagaaatagaggaggcaccccaggca gccattacatcagtaaaacaggacattctgttcacatgagggggttaccattccaagctttggacagtgacattatagag ttcttttcaccccttggcgtgactccagtcagagttgagtttgagacaggtccaaatggaaggcccacgggggaggcaaa tgttgattttaagacacatcaagatgccgtagaggccatgcaaaaccacaagaaaaatatggaacacagatatattgagc tatttttaaattccacaccaaacctatcagggagatctagctacggatccgggggtggattcggtggtggaggtggaatg ggtggcagaatttgtgacagcgacttcgacagtggagattttaatggaaacggctttggcggtatgggtggatttggacc aagtggtggaaggatgggaatgggtggcaggatgaatcctaactacacagaattctaa |
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Protein
| Protein ID | pfu_aug1.0_6626.1_67486.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6626.1_67486.t1 FRSKKSEMDWVIKRAGPGQMPGSNEAVVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQGRSTGEAYVQFATQEIA ENALLKHKERIGHRYIEIFKSSMQEASGAMGNVSRIRPLMGGSGMGGMNRPGPYDRSSRLGMGGGMGMGGGGGGGGMGGG MGGYGMGRGGRNLKGFFDDDFDDYGSGYGGGPGFGGPRRGMMGNMRQQSRGRMGGGQSMMGGGGGGGGGMGRNRGGTPGS HYISKTGHSVHMRGLPFQALDSDIIEFFSPLGVTPVRVEFETGPNGRPTGEANVDFKTHQDAVEAMQNHKKNMEHRYIEL FLNSTPNLSGRSSYGSGGGFGGGGGMGGRICDSDFDSGDFNGNGFGGMGGFGPSGGRMGMGGRMNPNYTEF |
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