Gene
| Gene Model ID | pfu_aug1.0_6628.1_31252 |
|---|---|
| Locus | scaffold6628.1 : 41750 ... 54684 : - |
| To GenomeBrowser | scaffold6628.1:41750..54684 |
| Genes list of scaffold | scaffold6628.1 |
| Synonym | NA |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | lipoxygenase homology domain-containing protein 1-like |
| Description | A bit dodgy.Surfaced when conducting a pfam domain search for fgf. Protein blast searches showed affinities with relatively high e-value (low affinity) to lipoxygenase homology domain-containing protein 1-like genes from ciona, chicken, and human. |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6628.1_31252.t1 | gi|260821892|ref|XP_002606337.1| | hypothetical protein BRAFLDRAFT_67580 [Branchiostoma floridae] | 2.0e-39 |
Transcript
| Transcript ID | pfu_aug1.0_6628.1_31252.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6628.1_31252.t1 ggaaaaggaggaccattttgtgagttccgagttcgagttcagggtgacagatctgtaatgctagaatcggtgaagaatcc tctgcagttcctgacatttggcgaaggtggtcaaccagagaacgtcaaaggaatcttagacaaggaaaagactaggcgtt tctttgttttctgtaaaggtatgtttcgtcatcgaggagttgtgatgtttagttcttccttgacacagaccattacaata aacccagatatgaccatgacagcgttaggaaagaaggctaaaatggcacacttcagagttcataaagttggaaatggtgt ccggatgtttgaaagtatagctcatcctggaaagtacatcagattgaaagatggaaagattgactgcctgggagaaagga atgagttttcacaatttttggtggagaaaaggaaatcaggaggctatgtgagtttacaatcagcaaaacaaagaggttta tacctgggaatgaaacctgatggtcgagtatggcctactgtggacacaggggttaacaacatacatctcttcccagaagt cattgaatggggtgcacccaaaatgacagaggacgatgttatagaggaagtggatgaagagccgctggaggcagatcaga caacgacccaggccaaggcactgagccctgaacccgagcaatcacatgcagagcgttgtttacacgtcacgacagaacgg attaaactgattgaaaagaagctagctaaacgaataccttcctacataactatacttataccttcttcgctttgtatgta taacaaaacgatgtcttctgattgtgacgtcaaacagtga |
|
Protein
| Protein ID | pfu_aug1.0_6628.1_31252.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6628.1_31252.t1 GKGGPFCEFRVRVQGDRSVMLESVKNPLQFLTFGEGGQPENVKGILDKEKTRRFFVFCKGMFRHRGVVMFSSSLTQTITI NPDMTMTALGKKAKMAHFRVHKVGNGVRMFESIAHPGKYIRLKDGKIDCLGERNEFSQFLVEKRKSGGYVSLQSAKQRGL YLGMKPDGRVWPTVDTGVNNIHLFPEVIEWGAPKMTEDDVIEEVDEEPLEADQTTTQAKALSPEPEQSHAERCLHVTTER IKLIEKKLAKRIPSYITILIPSSLCMYNKTMSSDCDVKQ |
|