Gene
Gene Model ID | pfu_aug1.0_6636.1_67493 |
---|---|
Locus | scaffold6636.1 : 29466 ... 45665 : + |
To GenomeBrowser | scaffold6636.1:29466..45665 |
Genes list of scaffold | scaffold6636.1 |
Synonym | pfu_aug2.0_2334.1_15489 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6636.1_67493.t1 | 1 | 1 | MRP-S24 | 32 | 164 | 1.4013e-45 | 154.4 | 0.0 | 1.4013e-45 | 154.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6636.1_67493.t1 | gi|126697452|gb|ABO26683.1| | mitochondrial ribosomal protein S24 [Haliotis discus discus] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
>Adult tissues | |
adductorMuscle | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_6636.1_67493.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6636.1_67493.t1 atgttaactataaaaagcaatttgtgcttcatagagcatttacagaaattgaatacaagatggataaaaacttcttctgt actatgcaaaaatctcagggctggaaaggtcaaagctaacaaaatgagaaaacaaagactgacatatgaaaaagccaata ctccacctacaataggagtccgaaagtcatggttatcttggaatacaagcaacctgaaggatgaggaaaagtcatcacag agagcatttgaagatctgatcatcagaaaattcatcactgggacctgggttggtagacttgaggtcatctcagaggttat tatcaaaagaagatataactgtgtttacatagcttttatagtgaatgaaagcagagaacttttaaatgcaaattactttc ttaaaggatactctgaggaaatgctatccataatattgaagtgccctgtgaaatgtgagataattagagcaacaaatgat gaccttgtttacggcattatatga |
Protein
Protein ID | pfu_aug1.0_6636.1_67493.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6636.1_67493.t1 MLTIKSNLCFIEHLQKLNTRWIKTSSVLCKNLRAGKVKANKMRKQRLTYEKANTPPTIGVRKSWLSWNTSNLKDEEKSSQ RAFEDLIIRKFITGTWVGRLEVISEVIIKRRYNCVYIAFIVNESRELLNANYFLKGYSEEMLSIILKCPVKCEIIRATND DLVYGII |