Gene
| Gene Model ID | pfu_aug1.0_6661.1_45494 |
|---|---|
| Locus | scaffold6661.1 : 1 ... 15998 : + |
| To GenomeBrowser | scaffold6661.1:1..15998 |
| Genes list of scaffold | scaffold6661.1 |
| Synonym | pfu_aug2.0_2210.1_02048 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6661.1_45494.t1 | 2 | 1 | Lactamase_B_2 | 19 | 172 | 2.6e-10 | 40.1 | 4.2e-13 | 1.3e-09 | 37.9 |
| pfu_aug1.0_6661.1_45494.t1 | 1 | 1 | Lactamase_B | 20 | 152 | 3.5e-10 | 39.8 | 2.7e-13 | 8.1e-10 | 38.6 |
| pfu_aug1.0_6661.1_45494.t1 | 3 | 1 | Beta-Casp | 79 | 93 | 7.0e-10 | 38.9 | 0.94 | 2800.0 | -1.8 |
| pfu_aug1.0_6661.1_45494.t1 | 3 | 2 | Beta-Casp | 207 | 268 | 7.0e-10 | 38.9 | 3.0e-11 | 9.0e-08 | 32.1 |
| pfu_aug1.0_6661.1_45494.t1 | 2 | 2 | Lactamase_B_2 | 218 | 270 | 2.6e-10 | 40.1 | 0.2 | 590.0 | -0.2 |
| pfu_aug1.0_6661.1_45494.t1 | 3 | 3 | Beta-Casp | 268 | 284 | 7.0e-10 | 38.9 | 0.0082 | 24.0 | 4.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6661.1_45494.t1 | gi|348503157|ref|XP_003439132.1| | PREDICTED: integrator complex subunit 11-like isoform X1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6661.1_45494.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6661.1_45494.t1 gtgcaggacaggagaagatttccagattttacttacattactaaagaggggacattaacagatcatctggactgtgtcat aataagtcatttccatttggaccattgtggagcattgccgtacatgtcagaaatggtgggatacgatggtcctatataca tgacacatccaactaaagccatatgtcctattttactggaggactacagaaagatcacagtagagaggaagggagaggag aacttctttacatcagaaatgattaggaactgtatgaagaaagtcatacctgtcaacctacatgaaactaaacaggtaga cgatgagctggagatcaaggcgtattatgcaggtcatgttttaggagctgccatgttccatatgaaagtcggacagcagt ctgttgtatatacaggtgactataacatgacaccagaccgccatcttggagctgcctggatagataaatgtcggccagat cttctcatcacagagtcgacttacgccacaacgatacgtgattccaagaggtgtcgggagcgggacttccttaaaaaggt ccatgactgtgtagagaaagggggcaaggtgttaatcccagtatttgctttgggccgtgcccaggagttgtgtatattac tagagtcgtactgggacagaatgaatctcaaagtgcctatttatttctcacttggtctcacagaaaaggctaaccattac tacaaattattcatcacatggacaagccaaaagatcaagaagacatttgtacagagaaacatgtttgagtttaaacacat caaggtaatcatgccaggatactgtgtacagggaacagttggtcataaaatacttaatggtgtccgtaaactagagatgg agaataaacagacgctggacgtaaaactatcggtacagtacatgtccttcagtgctcatgctgatgccaagggttttgtc agtatatga |
|
Protein
| Protein ID | pfu_aug1.0_6661.1_45494.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6661.1_45494.t1 VQDRRRFPDFTYITKEGTLTDHLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVERKGEE NFFTSEMIRNCMKKVIPVNLHETKQVDDELEIKAYYAGHVLGAAMFHMKVGQQSVVYTGDYNMTPDRHLGAAWIDKCRPD LLITESTYATTIRDSKRCRERDFLKKVHDCVEKGGKVLIPVFALGRAQELCILLESYWDRMNLKVPIYFSLGLTEKANHY YKLFITWTSQKIKKTFVQRNMFEFKHIKVIMPGYCVQGTVGHKILNGVRKLEMENKQTLDVKLSVQYMSFSAHADAKGFV SI |
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