Gene
| Gene Model ID | pfu_aug1.0_6682.1_02287 |
|---|---|
| Locus | scaffold6682.1 : 20854 ... 24405 : - |
| To GenomeBrowser | scaffold6682.1:20854..24405 |
| Genes list of scaffold | scaffold6682.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | actin |
| Description | Actin partial sequence. BLASTP top hit to AL160004(Homo sapiens). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6682.1_02287.t1 | 2 | 1 | Actin | 3 | 86 | 0.0 | 351.8 | 1.4e-30 | 2.1e-26 | 92.2 |
| pfu_aug1.0_6682.1_02287.t1 | 2 | 2 | Actin | 89 | 262 | 0.0 | 351.8 | 0.0 | 0.0 | 258.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6682.1_02287.t1 | gi|56204817|emb|CAI19051.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6682.1_02287.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6682.1_02287.t1 atggatgacgacgtagcagccttagtagtggacaatgggtccggtatgtgtaaagccgggtttgccggagacgatgcccc ccgtgctgtgttcccctccatcgtcggcaggccccgccatcagggtgtcatggtgggaatggggcagaaagacagctatg tcggcgatgaagcccaaagcaagagaggtatccttaccctgaagtatccaattgaacacggtatcgtcacaaactgggat gacatggagaaaaatctggcanctaccactgccgagagagaaattgtcagggatatcaaagaaaaactttgttacgttgc tctggacttcgaacaggagatgcaaactgcagcctcatcatcttccctcgaaaagagctacgaattacctgacggacagg ttatcaccattggtaacgagagattccgctgcccggaaacgctgtatcagccatcttttatcggtatggaatccgcaggt atccatgaaactacgtataacagcatcatgaaatgtgacgttgacatccgtaaggacctatacgccaacactgtattgtc cggcggtaccaccatgttcccagggatcgctgaccgtatgcagaaggagattgccgctttagcaccaccaacaatgaaaa tcaagattatcgcaccaccagagagaaaatactccgtctggattggtggatccatcttggcatccctctccaccttccag cagatgtggatcagcaagcaggaatacgatgaatccggcccatccatcgtgcatagaaagtgtttctaa |
|
Protein
| Protein ID | pfu_aug1.0_6682.1_02287.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6682.1_02287.t1 MDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD DMEKNLAXTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLYQPSFIGMESAG IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEIAALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ QMWISKQEYDESGPSIVHRKCF |
|