Gene
| Gene Model ID | pfu_aug1.0_6691.1_67508 |
|---|---|
| Locus | scaffold6691.1 : 1 ... 22885 : - |
| To GenomeBrowser | scaffold6691.1:1..22885 |
| Genes list of scaffold | scaffold6691.1 |
| Synonym | NA |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | DMRT-2 |
| Description | bidirectional best hit to ADD97887 (Pinctada martensi)partial CDS |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6691.1_67508.t1 | 1 | 1 | Astacin | 229 | 334 | 1.1e-14 | 54.2 | 1.1e-17 | 2.4e-14 | 53.1 |
| pfu_aug1.0_6691.1_67508.t1 | 2 | 1 | Sushi | 370 | 381 | 6.5e-06 | 26.4 | 0.22 | 460.0 | 1.2 |
| pfu_aug1.0_6691.1_67508.t1 | 1 | 1 | CUB | 465 | 541 | 2.2e-10 | 40.6 | 2.6e-13 | 5.4e-10 | 39.3 |
| pfu_aug1.0_6691.1_67508.t1 | 2 | 2 | Sushi | 550 | 606 | 6.5e-06 | 26.4 | 5.3e-08 | 0.00011 | 22.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6691.1_67508.t1 | gi|291360842|gb|ADD97887.1| | double sex and Mab-3 related transcription factor 2 [Pinctada martensii] | 1.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_6691.1_67508.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6691.1_67508.t1 atgcgcaaacgacgatgttttgctgatcgagatcttgacattgcaatgttcgaaagagaagaaaccttgtctacagatca cagagatgatgctttaattcggacaaacgtcaccagacctattgtgaatcgtgtctgcacaagctatgacaaagattacc aaagcagccgcatgttctatggtcaaggcattgtaattgggaattttgtcagtcagtatttaagacctcgctacttaatt ttttctctacgaagtccttacgagcaggaaacaaaggactttgccgaagacatcaatgagcataaaacatcacacgagga aaaactcttggaggaagaggatgaattcttttcttatgaaaaacagagaaaaatagcaaaaaagaaaggtgtggatcctc agagggtagatatacctaaaaaggcacaacagtttgagattcaatatggtgttggaaaaacaaaacgtaaaagaaagagg aaatggtcgaaacgactacagcaaaatcagaagagaaaacgtcgtcaaggaagaaagaagagatttgccttaaaagacga ggatcgatactggacaaacgctatagttccttacgttttcacgtcagacatcaaaggtagcattaatgcaatagaaacgg actctactcagacactcagacgtagcattgaaaagaacggaagtgcctgtttacatgagctgggtcactctcttggtctg caacatgagcaaaaaagtccacttcatgatgagtacatcagggtgaacgacgaaaacataataaaagagagacttggaga atatgaggaggatattaagggagatgggaagacgtttggatattatgacctaggagatcaaatgcactataaacgattta tgttttcgaagaattcgaagccgaccatgacgctgtatgacccacagatggaatatctacttttaagctctgatccacat aattactatatgtttaaagaaataacgcagattcataaatgtgcaggatttaaagatggtgtagtcggatttgacaacat gcaaaaacctgaggtattgaagcaccccattccagacagtcagcatgacaagaacctagtcctacatgtatgttgtcgtg aagatggcagctggaaggatcctctcatattacccacaaaagaagcatttgtcctgtttcaaaaaggggatgagtgtcag gaagtaaaagatatgatgtcatccagcgagtggttccttattgacaacgactttacaggacttgacaagatagaaggcct ggtaccagagatagaagttatcagggcatccaagtattatataggaatttgttattactggccaatcaactacagtatga catatacatacatatacttttctatagaattcaattcaccagttgggtctcatgtggagttggacttccaaagctttgac atagagctcagagaagacgattcgtgtggagattcgttagaagtccgtactggattaccgggacagctaggaataaatta ctgtggtgatactttcaaaccaaccgttatgagtgagcagaattatcttggtcttattttcacaagtggtccagaagtga caaagagaggatttaaagctaaactgtctgttattcgacagataaaatgtgcaagaccggtagatggacaaaatacagtg gaacttaccggcaaaagagaagtaactgtaggaagaatgttcgaatatcgatgtaagaaaggttacattcacagtgaagg aaacttacgtagagtgtgtcttaaatctggcaaacttagtggtgatatcccgaaatgcatatccgaacactccattccaa cagctaacaatgctatagagctcagacagcggcgtcaggatggacgtgacggcaccgcttacgtaggactgaatgatgca cagaggatacacaaaaacggcctgctagtacgctggatgttctacagtatatatgacggttcggtttcatcttaa |
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Protein
| Protein ID | pfu_aug1.0_6691.1_67508.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6691.1_67508.t1 MRKRRCFADRDLDIAMFEREETLSTDHRDDALIRTNVTRPIVNRVCTSYDKDYQSSRMFYGQGIVIGNFVSQYLRPRYLI FSLRSPYEQETKDFAEDINEHKTSHEEKLLEEEDEFFSYEKQRKIAKKKGVDPQRVDIPKKAQQFEIQYGVGKTKRKRKR KWSKRLQQNQKRKRRQGRKKRFALKDEDRYWTNAIVPYVFTSDIKGSINAIETDSTQTLRRSIEKNGSACLHELGHSLGL QHEQKSPLHDEYIRVNDENIIKERLGEYEEDIKGDGKTFGYYDLGDQMHYKRFMFSKNSKPTMTLYDPQMEYLLLSSDPH NYYMFKEITQIHKCAGFKDGVVGFDNMQKPEVLKHPIPDSQHDKNLVLHVCCREDGSWKDPLILPTKEAFVLFQKGDECQ EVKDMMSSSEWFLIDNDFTGLDKIEGLVPEIEVIRASKYYIGICYYWPINYSMTYTYIYFSIEFNSPVGSHVELDFQSFD IELREDDSCGDSLEVRTGLPGQLGINYCGDTFKPTVMSEQNYLGLIFTSGPEVTKRGFKAKLSVIRQIKCARPVDGQNTV ELTGKREVTVGRMFEYRCKKGYIHSEGNLRRVCLKSGKLSGDIPKCISEHSIPTANNAIELRQRRQDGRDGTAYVGLNDA QRIHKNGLLVRWMFYSIYDGSVSS |
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