Gene
| Gene Model ID | pfu_aug1.0_6696.1_67517 |
|---|---|
| Locus | scaffold6696.1 : 1 ... 19075 : - |
| To GenomeBrowser | scaffold6696.1:1..19075 |
| Genes list of scaffold | scaffold6696.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | myosin-Ib |
| Description | NCBI BLASTP hit to XP_001920959.3|PREDICTED: myosin-Ib isoform 1[Danio Renio]. Orthology is supported by NJ tree. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6696.1_67517.t1 | 1 | 1 | Myosin_head | 1 | 107 | 8.5e-34 | 116.6 | 2.2e-37 | 1.1e-33 | 116.3 |
| pfu_aug1.0_6696.1_67517.t1 | 2 | 1 | Myosin_TH1 | 194 | 240 | 1.4e-10 | 40.8 | 1.7e-08 | 8.6e-05 | 21.9 |
| pfu_aug1.0_6696.1_67517.t1 | 2 | 2 | Myosin_TH1 | 246 | 285 | 1.4e-10 | 40.8 | 8.4e-07 | 0.0042 | 16.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6696.1_67517.t1 | gi|344258955|gb|EGW15059.1| | Myosin-Ib, partial [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6696.1_67517.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6696.1_67517.t1 atgaaaaatttactctttaaaaacccaaattatatcagatgtatcaagcccaacaatgataaggcagcagattctattga tcaagacttagttagacatcaagtacgatatctaggactgatggaaaatgtacgagtgaagcgtgctggttacgcattcc gacaagtctactccgtgtttctgtaccgttacaagatgctggccaaagacacatggccccactggaaaggggaggcccag gaaggggtgcgcaaaatcttacaggctcaagaaattccagaagaagaatttgctttcggcaagacaaaaatattcattag gaacccaaaactgttgtttgaccttgaggagaggagacgacaacagatgcataatctagcaacaatgatccagaagattt acaaaggctggaaacagagaactctgtacttattgatgcggagaagtcagatcgtaatatcagcaagattcagggggtac tggcatagtgtcactttgtccgtctgtccatccgtccgtctgtcagtccgtctgtctgtcacactttgggtgtcacagcc cataacttttgattgagtgccagtccccttcaggggagattaccagaatttacgtcagagtccaaaatggaagaagctgt ctcagcagttaccaggagatggacatatagtgtttgctgatattataaagaaggtcaaccgtgctaacggcaagagtgat aatggagatggtacatccaagaaaggtgactttgtcatcgtgtgcgatcatgctatcgaactcgtagccaaggcctctct ggtcatacagaatgctacaaactccaaacctaacgtcaaaatatctcagacggcgctcacaccctttattgggactgggg ccggggcctttgaaatcgtgaaaaatgtggtgttttctcgaaaattggggcaacacatgcattccttggattga |
|
Protein
| Protein ID | pfu_aug1.0_6696.1_67517.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6696.1_67517.t1 MKNLLFKNPNYIRCIKPNNDKAADSIDQDLVRHQVRYLGLMENVRVKRAGYAFRQVYSVFLYRYKMLAKDTWPHWKGEAQ EGVRKILQAQEIPEEEFAFGKTKIFIRNPKLLFDLEERRRQQMHNLATMIQKIYKGWKQRTLYLLMRRSQIVISARFRGY WHSVTLSVCPSVRLSVRLSVTLWVSQPITFDXVPVPFRGDYQNLRQSPKWKKLSQQLPGDGHIVFADIIKKVNRANGKSD NGDGTSKKGDFVIVCDHAIELVAKASLVIQNATNSKPNVKISQTALTPFIGTGAGAFEIVKNVVFSRKLGQHMHSLD |
|