Gene
| Gene Model ID | pfu_aug1.0_67.1_36267 |
|---|---|
| Locus | scaffold67.1 : 56206 ... 88756 : + |
| To GenomeBrowser | scaffold67.1:56206..88756 |
| Genes list of scaffold | scaffold67.1 |
| Synonym | pfu_aug2.0_318.1_27215 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_67.1_36267.t1 | 1 | 1 | zf-LITAF-like | 59 | 131 | 2.0e-28 | 98.0 | 1.4e-31 | 2.6e-28 | 97.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_67.1_36267.t1 | gi|114797044|gb|ABI79459.1| | LPS-induced TNF-alpha factor [Azumapecten farreri] | 7.00005e-41 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_67.1_36267.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_67.1_36267.t1 atgtcagcaccacctcccccatatccagggacagagaagggacctgagcccatgtatccacaagctcagccagctggata ccctccacaaccctatggtcaaccaggtcagcctggttatggacagaccaccgtagtggttgcccagccagcggtctccg tagtacagaccttccgagagacaccagtacactgtcggtgcccccactgtcaggctgaggtagtgacggccacccagtac gagaccggcaccatggcatggatcgtctgcctcgtcctttgtctcgtgggatgtgaccttggatgttgcttgattccgtt ctgcgttgatggatgtaaggatgtgatccatacctgtcccaactgtaaacaggtcatctcccgctataatcgtatgtag |
|
Protein
| Protein ID | pfu_aug1.0_67.1_36267.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_67.1_36267.t1 MSAPPPPYPGTEKGPEPMYPQAQPAGYPPQPYGQPGQPGYGQTTVVVAQPAVSVVQTFRETPVHCRCPHCQAEVVTATQY ETGTMAWIVCLVLCLVGCDLGCCLIPFCVDGCKDVIHTCPNCKQVISRYNRM |
|