Gene
| Gene Model ID | pfu_aug1.0_6723.1_09414 |
|---|---|
| Locus | scaffold6723.1 : 3770 ... 13035 : - |
| To GenomeBrowser | scaffold6723.1:3770..13035 |
| Genes list of scaffold | scaffold6723.1 |
| Synonym | pfu_aug2.0_91.1_03587 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715632 (MgC1q53). 111 bits, 6e-23 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6723.1_09414.t1 | 1 | 1 | C1q | 64 | 183 | 2.4e-17 | 63.0 | 2.3e-21 | 3.4e-17 | 62.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_6723.1_09414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6723.1_09414.t1 atggctaatgaatggtttgtagtatttactatcctggtcatgattactatgacagactgcaaggtaatcagaggaccaat atctcaaacagtcgattcgatagagggagaaaatgtaatgttgaaacaacacattgggaaattttgcaagaaggaattca attcaagtattctggttccggacatggtggctttcaccggtgtccttacaggaacgataacccttggcgatgaacaggtg ttaatctacaacaaagtcctgttgaatgttggaaacggatataatataaagagtggtcactttgtggcacctgtatcagg tatatactcggtgtctgtttctctgatgggatttcagtcaaacagtgtgcatcttcaactggtaaaggatggaaaagagc tggtacgtctgtggacagccataggttctcatagattgggagcccagacaatagctgtacaactacggaaaaatgaagct gtatgggtacgtcgacgtaaagagacaggagggaaaatatatggaggtgaaccattcaacactttttctgtcgttctagt agccagtggagtgtaccagtga |
|
Protein
| Protein ID | pfu_aug1.0_6723.1_09414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6723.1_09414.t1 MANEWFVVFTILVMITMTDCKVIRGPISQTVDSIEGENVMLKQHIGKFCKKEFNSSILVPDMVAFTGVLTGTITLGDEQV LIYNKVLLNVGNGYNIKSGHFVAPVSGIYSVSVSLMGFQSNSVHLQLVKDGKELVRLWTAIGSHRLGAQTIAVQLRKNEA VWVRRRKETGGKIYGGEPFNTFSVVLVASGVYQ |
|