Gene
Gene Model ID | pfu_aug1.0_6723.1_09414 |
---|---|
Locus | scaffold6723.1 : 3770 ... 13035 : - |
To GenomeBrowser | scaffold6723.1:3770..13035 |
Genes list of scaffold | scaffold6723.1 |
Synonym | pfu_aug2.0_91.1_03587 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | C1q domain containing protein |
Description | Best hit to FR715632 (MgC1q53). 111 bits, 6e-23 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6723.1_09414.t1 | 1 | 1 | C1q | 64 | 183 | 2.4e-17 | 63.0 | 2.3e-21 | 3.4e-17 | 62.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_6723.1_09414.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6723.1_09414.t1 atggctaatgaatggtttgtagtatttactatcctggtcatgattactatgacagactgcaaggtaatcagaggaccaat atctcaaacagtcgattcgatagagggagaaaatgtaatgttgaaacaacacattgggaaattttgcaagaaggaattca attcaagtattctggttccggacatggtggctttcaccggtgtccttacaggaacgataacccttggcgatgaacaggtg ttaatctacaacaaagtcctgttgaatgttggaaacggatataatataaagagtggtcactttgtggcacctgtatcagg tatatactcggtgtctgtttctctgatgggatttcagtcaaacagtgtgcatcttcaactggtaaaggatggaaaagagc tggtacgtctgtggacagccataggttctcatagattgggagcccagacaatagctgtacaactacggaaaaatgaagct gtatgggtacgtcgacgtaaagagacaggagggaaaatatatggaggtgaaccattcaacactttttctgtcgttctagt agccagtggagtgtaccagtga |
Protein
Protein ID | pfu_aug1.0_6723.1_09414.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6723.1_09414.t1 MANEWFVVFTILVMITMTDCKVIRGPISQTVDSIEGENVMLKQHIGKFCKKEFNSSILVPDMVAFTGVLTGTITLGDEQV LIYNKVLLNVGNGYNIKSGHFVAPVSGIYSVSVSLMGFQSNSVHLQLVKDGKELVRLWTAIGSHRLGAQTIAVQLRKNEA VWVRRRKETGGKIYGGEPFNTFSVVLVASGVYQ |