Gene
| Gene Model ID | pfu_aug1.0_67499.1_34771 |
|---|---|
| Locus | scaffold67499.1 : 10 ... 1774 : + |
| To GenomeBrowser | scaffold67499.1:10..1774 |
| Genes list of scaffold | scaffold67499.1 |
| Synonym | pfu_aug2.0_581.1_04360 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_67499.1_34771.t1 | 1 | 1 | DUF2348 | 1 | 248 | 1.40004e-41 | 142.2 | 2.8026e-45 | 1.6e-41 | 142.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_67499.1_34771.t1 | gi|157817755|ref|NP_001102252.1| | elongator complex protein 6 [Rattus norvegicus] | 2.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_67499.1_34771.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_67499.1_34771.t1 atgttcacacaagttaacaaccttttaaatttacccaatgacaagatattgagcaacaaaatattgaccttgtcagaatc aggcgcagacggcacatttttaattcaccatttcctcttacatcatatgagaaatgaacatccagtttgttttgtgtcat tgtcacagtcatttggacattacaatgtagtggcaacaaaatggggatcaccattgacgttatacaaggaaaagggtatt ttgagctttatcgacattttgagtatgacgagagaatgtcttggggacgacacaaagaatcattcttttcttcttggagt aagtgcaaatcccaaaggatcaatgaaagaactgattgatttaataaaacaaaagtatgacaaattaaaagaatgcacat caaagacacctgttattataatagacaatttgagtctgtggattgatattggctattcaattaatcaagtcatacatttt gtgaacgtgttgaatcggctagttttgaaaccttgccagccagatttagaggcagggtcatttatatcaaatcttgatag tggattgactcatgatgatattgacaaaacagttctgtggaaatacatgtctcatatgtctgatatgacgatagaggttt caggattggacagtggtttttgtaaagaagttcatgggaagataaaggttagctggaaggattcactactaaagataact tcgaggattatgcaatttcgagtgatggacaaaagcattgccttatttgcaagtggaatgtcaagtgctgttatttga |
|
Protein
| Protein ID | pfu_aug1.0_67499.1_34771.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_67499.1_34771.t1 MFTQVNNLLNLPNDKILSNKILTLSESGADGTFLIHHFLLHHMRNEHPVCFVSLSQSFGHYNVVATKWGSPLTLYKEKGI LSFIDILSMTRECLGDDTKNHSFLLGVSANPKGSMKELIDLIKQKYDKLKECTSKTPVIIIDNLSLWIDIGYSINQVIHF VNVLNRLVLKPCQPDLEAGSFISNLDSGLTHDDIDKTVLWKYMSHMSDMTIEVSGLDSGFCKEVHGKIKVSWKDSLLKIT SRIMQFRVMDKSIALFASGMSSAVI |
|