Gene
| Gene Model ID | pfu_aug1.0_6751.1_67534 |
|---|---|
| Locus | scaffold6751.1 : 1 ... 18441 : + |
| To GenomeBrowser | scaffold6751.1:1..18441 |
| Genes list of scaffold | scaffold6751.1 |
| Synonym | pfu_aug2.0_964.1_14689 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6751.1_67534.t1 | 1 | 1 | DEAD | 413 | 589 | 3.9e-30 | 104.5 | 3.2e-33 | 1.2e-29 | 102.9 |
| pfu_aug1.0_6751.1_67534.t1 | 1 | 1 | ResIII | 415 | 586 | 2.6e-10 | 40.4 | 1.3e-13 | 4.8e-10 | 39.5 |
| pfu_aug1.0_6751.1_67534.t1 | 2 | 1 | Sec63 | 795 | 874 | 1.2e-37 | 129.8 | 2.9e-27 | 1.1e-23 | 84.0 |
| pfu_aug1.0_6751.1_67534.t1 | 2 | 2 | Sec63 | 872 | 931 | 1.2e-37 | 129.8 | 3.2e-16 | 1.2e-12 | 47.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6751.1_67534.t1 | gi|339258080|ref|XP_003369226.1| | putative Sec63 domain protein [Trichinella spiralis] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6751.1_67534.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6751.1_67534.t1 acgtgttaaaagagatgaagtccaacacgacatgatgagaatgaaaggtacaactttactttctgagggaatagaagagc ttgtcggtattctgtatcgtcccaaaacccaggaaacacgtcaaacttacgaagttattcttagctttattcaagcagcc ttgggagatcagcctcgagatgtactgtgtggagcagcggatgaagtactacaagtcctgaaaaatgacaagatgaagga taaggagaggaagaaggaagtggagtctctgttaggtggactggctgaggaaaggtttgcactgctggtaaatctgggta aaaagatcacagactggggacaagaagaaaagatgcaaactgatgataacatagatgagacctatggtgtcaacgtgcag tttgaggaatctgacgatgaagatgatgctgatgtgtatggagaagtcaaagatgaagtagaagatgaagacgcagagga aggtgtggaagctgatattgacgtcaccctgaagacaagtttggctggtggggaggatgggagtggcaagtcagacatag gcctccaccccagggacatcgacgccttctggctccagaggaagctcagtaaatactacccagaagatcccactatggcc cagactaaggccggggaagtactggatattctcaagagttcaggggatgatagagaggcagagaaccaacttgttatgct gcttggattttctacttttgacttcatcaaagtgcttaggcagtacagacaaatgattctgtactgtacgatgctggctc aggcccagacccaggatgagagacaggggatagaggataaaatgtccagtgatgctgagctgtctggctacctcaaggca ctggcctctactgataaggaagatatagtgtcaggggaggtggccaggaaacaacaggcaaggcagagtagggtagcagc tgatctggaagctatggatgtagatcataaacaagttctaggtcaagtgaacctgttagacttggatgacctgaccttca cacaaggcagtcacctgatggccaataaaaagtgtcagctacctgatggatccttcagaaaacagaggaaaggttacgag gaagtccatgtgccagccttgaagccaaaaccgtatgatgcaaacgagactccgctgaacattgacagacttcctaagta tgcccagcaagcgtttgatggttttagctcactgaacagaatacagagccgtttattcaagagtgccatggaatctgatc agaatctcttactgtgtgcccctacgggagccggaaaaaccaatgtagctttactgtgcatgctgagggaaataggaaag catataaatgcagatggaaccattaacacagatgaattcaaaattatctacatagcccctatgagatccctggtacagga aatggtcgggagcttttcagagagactgaaatcttacggcataaaagtagaggaactgacgggagatcatcagctgacta aagagcagataaatgctacccagatcatcgtgtgtacgccagagaaatgggacataattacacggaaaggaggggagaga acctatacccagcttgtcaggctcatgatatttgatgagatccatttactacatgatgacagaggaccagttttagaggc acttgtagcaagaacaataaggaacatagagactacccaggaggatgtgagactggtaggtctcagtgccacgctcccga actatgaggacgtagccacctttctgagggtggatccagcggagggtctgtacttcttcgacaacagtttccgtcccgtt cctctagagcagcagtttatcggtatcacagagaagaaagctgtcaaacgatttcagatcatgaatgacattgtatatga aaaggttttggaacatgctggtaaaaatcaggtactggtatttgtacactcacgaaaggagactggtaaaacagcacgag ctataagagatatgtgtctggagaaagactcccttggtataatgatcaccaatcacagtgaactacagtacatgtactat ctgtccttaatgaatcaacagcttcccatagagagccagtttatcagtaagctaacagatatgttgaatgctgaggtagt actaggaactgtacaaagtattaaggaagctatagattggcttggttacacctacctgtacatccgtatgttgagatcac catctctctatggtgtcggccatgatcaactgaaggatgaccctctcctacaacagttcaggaaagatctcatccacacg gcagccctgatgctggataaaaataacctcataaaatacgaccgcaaaactgggcagttccagagtaccgagcttggacg tattgccagtcattactactgtactaatgagacgatatctacgtacaatcagctactgaagcccacacttagtgaaatag aactgttcagagttttctctctgtcgtctgaattcaaacatatatctgtacgtgaggaagagaagttagagctactgaag ctgttagagagagtacctatacccatcaaagaaagtatagaggaacccagtgctaaggcattttggataatggtagagga tgttgacagtgaggtcattctgcatcatgagtactttctactgaaaagcaaatttgcgacggatgaacacaatgtgaagt tctttgtacctgtgtttgaaccacttcctcctcagtactttatcagagtcatctctgacagatggattggtatgacatta tttattgaaaaaaatcacaatcaatgtaatattgattttaaaattttgatggaatgttttcattatgaagttgtgtag |
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Protein
| Protein ID | pfu_aug1.0_6751.1_67534.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6751.1_67534.t1 RVKRDEVQHDMMRMKGTTLLSEGIEELVGILYRPKTQETRQTYEVILSFIQAALGDQPRDVLCGAADEVLQVLKNDKMKD KERKKEVESLLGGLAEERFALLVNLGKKITDWGQEEKMQTDDNIDETYGVNVQFEESDDEDDADVYGEVKDEVEDEDAEE GVEADIDVTLKTSLAGGEDGSGKSDIGLHPRDIDAFWLQRKLSKYYPEDPTMAQTKAGEVLDILKSSGDDREAENQLVML LGFSTFDFIKVLRQYRQMILYCTMLAQAQTQDERQGIEDKMSSDAELSGYLKALASTDKEDIVSGEVARKQQARQSRVAA DLEAMDVDHKQVLGQVNLLDLDDLTFTQGSHLMANKKCQLPDGSFRKQRKGYEEVHVPALKPKPYDANETPLNIDRLPKY AQQAFDGFSSLNRIQSRLFKSAMESDQNLLLCAPTGAGKTNVALLCMLREIGKHINADGTINTDEFKIIYIAPMRSLVQE MVGSFSERLKSYGIKVEELTGDHQLTKEQINATQIIVCTPEKWDIITRKGGERTYTQLVRLMIFDEIHLLHDDRGPVLEA LVARTIRNIETTQEDVRLVGLSATLPNYEDVATFLRVDPAEGLYFFDNSFRPVPLEQQFIGITEKKAVKRFQIMNDIVYE KVLEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDSLGIMITNHSELQYMYYLSLMNQQLPIESQFISKLTDMLNAEVV LGTVQSIKEAIDWLGYTYLYIRMLRSPSLYGVGHDQLKDDPLLQQFRKDLIHTAALMLDKNNLIKYDRKTGQFQSTELGR IASHYYCTNETISTYNQLLKPTLSEIELFRVFSLSSEFKHISVREEEKLELLKLLERVPIPIKESIEEPSAKAFWIMVED VDSEVILHHEYFLLKSKFATDEHNVKFFVPVFEPLPPQYFIRVISDRWIGMTLFIEKNHNQCNIDFKILMECFHYEVV |
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