Gene
| Gene Model ID | pfu_aug1.0_6820.1_67560 |
|---|---|
| Locus | scaffold6820.1 : 13269 ... 21149 : - |
| To GenomeBrowser | scaffold6820.1:13269..21149 |
| Genes list of scaffold | scaffold6820.1 |
| Synonym | pfu_aug2.0_383.1_10708 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6820.1_67560.t1 | 1 | 1 | LRR_8 | 34 | 93 | 5.9e-08 | 32.3 | 5.4e-11 | 1.3e-07 | 31.2 |
| pfu_aug1.0_6820.1_67560.t1 | 2 | 1 | LRR_4 | 34 | 75 | 1.4e-07 | 30.9 | 4.8e-10 | 1.2e-06 | 27.9 |
| pfu_aug1.0_6820.1_67560.t1 | 4 | 1 | LRR_6 | 34 | 55 | 3.1e-06 | 26.6 | 9.5e-05 | 0.24 | 11.6 |
| pfu_aug1.0_6820.1_67560.t1 | 4 | 2 | LRR_6 | 58 | 73 | 3.1e-06 | 26.6 | 0.00011 | 0.27 | 11.4 |
| pfu_aug1.0_6820.1_67560.t1 | 2 | 2 | LRR_4 | 61 | 93 | 1.4e-07 | 30.9 | 2.6e-05 | 0.063 | 12.9 |
| pfu_aug1.0_6820.1_67560.t1 | 4 | 3 | LRR_6 | 193 | 207 | 3.1e-06 | 26.6 | 0.76 | 1900.0 | -0.5 |
| pfu_aug1.0_6820.1_67560.t1 | 4 | 4 | LRR_6 | 216 | 229 | 3.1e-06 | 26.6 | 0.48 | 1200.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6820.1_67560.t1 | gi|260782448|ref|XP_002586299.1| | hypothetical protein BRAFLDRAFT_82905 [Branchiostoma floridae] | 9.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6820.1_67560.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6820.1_67560.t1 actaacgaagcagatgctgagacagcactgtaaggacatgaagctttaccttacaccagcccttaatgatgtgctttacc tacattataaaaccggcatacctaagctgaacacgctgaatctgtcccacaatcgccttagcaacatagacggtctacaa catctggtggactgtgaatatctcagtgtccttgacctctcacataataaaatagaagatcctaaatgtctggaaatatt tggtgctatgaaaagcttgaaacacttgcagtacctggatgacagacctgtgtttgacaaggacagggcctgtgctgaag catggggagagggtggagtagagaaagaaagagaagtcagagatgaatgggcaaatacagagaggaagaaaataaaacaa agtctggacgcaatgttaaagataaagaagaaagctgaagcccagagaatcacaaaggagctgagggcaaagggtataga aggggaggtggatgtagacagtgtagactggctgacaggcaaataccgtatggtcggggaagaacctgcagaagaaaatg agaatacagataacccagaggaattagtcataagcaaggcaccaatatctgaaaaaggaatcttctctacttcaagtatg ttatttacaattttacaaatacaatgttgtaaagtcggaaaaagtgggaatgttaaactatcatga |
|
Protein
| Protein ID | pfu_aug1.0_6820.1_67560.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6820.1_67560.t1 LTKQMLRQHCKDMKLYLTPALNDVLYLHYKTGIPKLNTLNLSHNRLSNIDGLQHLVDCEYLSVLDLSHNKIEDPKCLEIF GAMKSLKHLQYLDDRPVFDKDRACAEAWGEGGVEKEREVRDEWANTERKKIKQSLDAMLKIKKKAEAQRITKELRAKGIE GEVDVDSVDWLTGKYRMVGEEPAEENENTDNPEELVISKAPISEKGIFSTSSMLFTILQIQCCKVGKSGNVKLS |
|