Gene
| Gene Model ID | pfu_aug1.0_68216.1_71028 |
|---|---|
| Locus | scaffold68216.1 : 1 ... 3769 : - |
| To GenomeBrowser | scaffold68216.1:1..3769 |
| Genes list of scaffold | scaffold68216.1 |
| Synonym | pfu_aug2.0_470.1_00794 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_68216.1_71028.t1 | 1 | 1 | DCX | 84 | 145 | 1.4e-09 | 37.4 | 1.4e-13 | 2.1e-09 | 36.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_68216.1_71028.t1 | gi|260823234|ref|XP_002604088.1| | hypothetical protein BRAFLDRAFT_71623 [Branchiostoma floridae] | 1.00053e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_68216.1_71028.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_68216.1_71028.t1 ctcgaccccacaaccatgagttcggagagacggaaggcgccgtctacggaaggacccgaggtctttatggagccaacgct tttcatcccggcagatacttccacggttcgcagccacatcggagacttccgggtaccttcggcacggcgaacaggaatac ttacctcccgcatgcagataatacggtgcctctcaaaccgaaagtagtgactattgtccgaaatggaaaccgtcccagaa acaatgttaaaattctgcttaacagacgtagtgttcagtcgtttgagcagcttatgtccgatatttcggaagcttttggt ccaaaatacaaaaacaataaagtcaagaaactgttctcgacgagaggtcgtgaagtgcagggaatctccgacttcttccg agacgatgacgtatttattggagtcggaaatgagactttgacggaaagtgacattgttgatattatagaggaggcctatc cagacagtccgtatgccaaaaacctccttaaggacttggagcgcaataagcgaaaacgacaacttgcggccaaagcggcg caagcggacaatgacgcggataaacgcgatagtggtttcggagagggaagcgacggaagtaacagggacccggatggagg tgattacgtcatctataaagggcgtggtcaggagcgagggagaagacggcatgattaccccaaggaatacgaacttgctg taagactcgacaaagagagagagaaaatcgcagcggacgaacgggaacgggcaagaaatcgtcaaaagaaaatgatagat gccgaaaagcgagcgatcgacgaagagaggcggaagaaaggattgatacccaacaaaggcgaagatcctttcagacgaat gaaggaacagaaggaacgagagcgggaggaacaaaggaaaaaaaagaggaagaaagactga |
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Protein
| Protein ID | pfu_aug1.0_68216.1_71028.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_68216.1_71028.t1 RPHNHEFGETEGAVYGRTRGLYGANAFHPGRYFHGSQPHRRLPGTFGTANRNTYLPHADNTVPLKPKVVTIVRNGNRPRN NVKILLNRRSVQSFEQLMSDISEAFGPKYKNNKVKKLFSTRGREVQGISDFFRDDDVFIGVGNETLTESDIVDIIEEAYP DSPYAKNLLKDLERNKRKRQLAAKAAQADNDADKRDSGFGEGSDGSNRDPDGGDYVIYKGRGQERGRRRHDYPKEYELAV RLDKEREKIAADERERARNRQKKMIDAEKRAIDEERRKKGLIPNKGEDPFRRMKEQKEREREEQRKKKRKKD |
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