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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_6864.1_24097
Locus scaffold6864.1 : 11416 ... 16689 : +
To GenomeBrowser scaffold6864.1:11416..16689
Genes list of scaffold scaffold6864.1
Synonym pfu_aug2.0_1269.1_31575

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_6864.1_24097.t1 1 1 BIR 166 232 4.5e-11 43.0 6.0e-15 4.5e-11 43.0
pfu_aug1.0_6864.1_24097.t1 2 1 zf-C3HC4_3 202 225 1.1e-09 37.8 0.084 620.0 0.1
pfu_aug1.0_6864.1_24097.t1 2 2 zf-C3HC4_3 368 410 1.1e-09 37.8 1.4e-13 1.1e-09 37.8

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_6864.1_24097.t1
Definition-
>pfu_aug1.0_6864.1_24097.t1
atgacttgtgtagcagagctgagaccaatgaattctctctaccaacttccaagtggattaatgaaggaaaatgaagattc
caaatacgggattatggaaagttcctgtgcctccaactctcgctatgctcatgatacatcaatggcgaaatctagttacc
aaaattctgataatggatatatcgtaactgctccatcagatgatgttaattccacaccatcttcatatccgaggcgactt
aatttgaagtggtcaaatgcttcgaaattttcaagtgttctgtactccgaaagtatgttggatagtcataatgggaatcg
ttgcgatggtgtgcaagaggatgtctgcatgacaactttcgccagcaaagagaagggaaaaaactttccaacagatgttc
ttgatggagactctggatatgattccaatacttcaaacttgtcaaatggatcagtggaaaatgcgatgtatcctcaattc
aaaaacattaatgcccgactcagaagcttttccgaatgtcaatccgttatctatcaaaaagctcaaaaactttcagaagc
tggtttcttcttagtgacttttatgattcaaagtttggcacgatgccatagctgcggaatagaattaaagaatttggaaa
caatacacgatcctatgactgagcatgcgcgctgctctcccaactgtagttacttacgtgccatgaaaggggatgaattt
attaaatctgcacaacgtatgcataagcagaactctttgcaagaaaaccactcgcataagtcatcaaacggtacaggatc
aagtcatagtaaagatgtagaaaagtatcccgattctacactacagaagaatcctttattaaccgatgctgcacaaagag
taatcaaaatgggctacctaccaaagcaagttaataaggctgtggaagaagttttgaaattaaaagattggatgacaatg
acgtgcaatgatattattggcaagttaaaagagcagaacgttttgccagcatctacttcgaatgatcatccaaatgtatt
aggaaaatttgactcgtcgaacattgcgtcgatcaaagaagaaattcgaacacttaaagaaagaaaactttgtaaagtgt
gctgtgaagaggatgtttctatagtttttctgccttgtgcacatttagtttgttgtgcacaatgtgcaccagctattcaa
aaatgtgctgtttgtaggaaacttgtcaaaggaactgtgagagtttcattctcaaattag

Protein
Protein IDpfu_aug1.0_6864.1_24097.t1
Definition-
>pfu_aug1.0_6864.1_24097.t1
MTCVAELRPMNSLYQLPSGLMKENEDSKYGIMESSCASNSRYAHDTSMAKSSYQNSDNGYIVTAPSDDVNSTPSSYPRRL
NLKWSNASKFSSVLYSESMLDSHNGNRCDGVQEDVCMTTFASKEKGKNFPTDVLDGDSGYDSNTSNLSNGSVENAMYPQF
KNINARLRSFSECQSVIYQKAQKLSEAGFFLVTFMIQSLARCHSCGIELKNLETIHDPMTEHARCSPNCSYLRAMKGDEF
IKSAQRMHKQNSLQENHSHKSSNGTGSSHSKDVEKYPDSTLQKNPLLTDAAQRVIKMGYLPKQVNKAVEEVLKLKDWMTM
TCNDIIGKLKEQNVLPASTSNDHPNVLGKFDSSNIASIKEEIRTLKERKLCKVCCEEDVSIVFLPCAHLVCCAQCAPAIQ
KCAVCRKLVKGTVRVSFSN

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