Gene
| Gene Model ID | pfu_aug1.0_6866.1_45525 |
|---|---|
| Locus | scaffold6866.1 : 23936 ... 37832 : + |
| To GenomeBrowser | scaffold6866.1:23936..37832 |
| Genes list of scaffold | scaffold6866.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6866.1_45525.t1 | 9 | 1 | LRR_1 | 51 | 65 | 3.6e-20 | 68.8 | 0.72 | 1200.0 | 0.3 |
| pfu_aug1.0_6866.1_45525.t1 | 5 | 1 | LRR_8 | 52 | 105 | 8.8e-34 | 115.0 | 2.9e-14 | 4.8e-11 | 42.2 |
| pfu_aug1.0_6866.1_45525.t1 | 2 | 1 | LRR_5 | 55 | 145 | 1.9e-18 | 66.4 | 2.0e-14 | 3.2e-11 | 43.0 |
| pfu_aug1.0_6866.1_45525.t1 | 4 | 1 | LRR_7 | 69 | 85 | 4.4e-07 | 29.0 | 0.017 | 28.0 | 5.5 |
| pfu_aug1.0_6866.1_45525.t1 | 6 | 1 | LRR_4 | 70 | 85 | 2.6e-23 | 81.1 | 0.0011 | 1.7 | 8.3 |
| pfu_aug1.0_6866.1_45525.t1 | 6 | 2 | LRR_4 | 70 | 108 | 2.6e-23 | 81.1 | 3.7e-10 | 6.1e-07 | 28.9 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 2 | LRR_1 | 70 | 90 | 3.6e-20 | 68.8 | 0.00057 | 0.94 | 9.7 |
| pfu_aug1.0_6866.1_45525.t1 | 5 | 2 | LRR_8 | 93 | 140 | 8.8e-34 | 115.0 | 2.6e-13 | 4.3e-10 | 39.1 |
| pfu_aug1.0_6866.1_45525.t1 | 6 | 3 | LRR_4 | 93 | 132 | 2.6e-23 | 81.1 | 1.8e-11 | 3.0e-08 | 33.1 |
| pfu_aug1.0_6866.1_45525.t1 | 4 | 2 | LRR_7 | 93 | 108 | 4.4e-07 | 29.0 | 0.0023 | 3.8 | 8.1 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 3 | LRR_1 | 94 | 113 | 3.6e-20 | 68.8 | 0.0007 | 1.2 | 9.4 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 4 | LRR_1 | 118 | 138 | 3.6e-20 | 68.8 | 1.9e-05 | 0.032 | 14.2 |
| pfu_aug1.0_6866.1_45525.t1 | 4 | 3 | LRR_7 | 118 | 131 | 4.4e-07 | 29.0 | 0.00072 | 1.2 | 9.6 |
| pfu_aug1.0_6866.1_45525.t1 | 5 | 3 | LRR_8 | 142 | 196 | 8.8e-34 | 115.0 | 8.1e-09 | 1.3e-05 | 24.8 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 5 | LRR_1 | 142 | 161 | 3.6e-20 | 68.8 | 0.28 | 470.0 | 1.5 |
| pfu_aug1.0_6866.1_45525.t1 | 6 | 4 | LRR_4 | 143 | 176 | 2.6e-23 | 81.1 | 0.00042 | 0.68 | 9.6 |
| pfu_aug1.0_6866.1_45525.t1 | 2 | 2 | LRR_5 | 165 | 268 | 1.9e-18 | 66.4 | 1.0e-07 | 0.00017 | 21.2 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 6 | LRR_1 | 166 | 186 | 3.6e-20 | 68.8 | 0.0034 | 5.7 | 7.3 |
| pfu_aug1.0_6866.1_45525.t1 | 6 | 5 | LRR_4 | 168 | 202 | 2.6e-23 | 81.1 | 0.00029 | 0.47 | 10.1 |
| pfu_aug1.0_6866.1_45525.t1 | 5 | 4 | LRR_8 | 200 | 249 | 8.8e-34 | 115.0 | 2.8e-09 | 4.6e-06 | 26.2 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 7 | LRR_1 | 213 | 234 | 3.6e-20 | 68.8 | 0.027 | 44.0 | 4.6 |
| pfu_aug1.0_6866.1_45525.t1 | 4 | 4 | LRR_7 | 238 | 253 | 4.4e-07 | 29.0 | 0.00033 | 0.54 | 10.6 |
| pfu_aug1.0_6866.1_45525.t1 | 5 | 5 | LRR_8 | 239 | 272 | 8.8e-34 | 115.0 | 0.00017 | 0.28 | 10.9 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 8 | LRR_1 | 239 | 256 | 3.6e-20 | 68.8 | 0.00033 | 0.54 | 10.4 |
| pfu_aug1.0_6866.1_45525.t1 | 6 | 6 | LRR_4 | 241 | 273 | 2.6e-23 | 81.1 | 9.2e-09 | 1.5e-05 | 24.4 |
| pfu_aug1.0_6866.1_45525.t1 | 9 | 9 | LRR_1 | 261 | 281 | 3.6e-20 | 68.8 | 0.072 | 120.0 | 3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6866.1_45525.t1 | gi|312380162|gb|EFR26241.1| | 6.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6866.1_45525.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6866.1_45525.t1 atggaagaagcgaaaccagccgtacacagagaccatgatggcttttcgaacactcctgaacctgtttgtagcggcaagtt tgatttgcaccagtcatgcaattacgtgtgctacgaactgtgcatgttcacaagaggaacaaaaaatcaagacatgactg gcaacggattgaaaagtatcgaggctgaagcattctatggagtagggaacctacgtcggcttacattgacagataacctg ctgacttctgttccctcggaaaccttcaaattgataccaaatttgaaatatttgtacatagaaaacaatagaatctccaa gttagtgaatcaaactttctcgatgctaaagaacttgactcgtttgtatttgagtcataataaactttcatatattgggg actatgtgtttaaggacgttcccattcagtacctatggatgattgactgtggattagcagagataccttcggtattggac agtctgtatgacatcacagacttggacataagcctgaataacttctctgtcattccatctgctgtgtttttcaatttaga gaaactcgtgtttttaagaatcagccatattcagggattgacagacgttcacgcggacgcttttatagggctagatagcc ttacgtctgtgcatatgaccgattgtccaaatctgaaagaattacctgaaaaggcattctggaaaaaccaacgtttgtgg agcttagatttacgtggaaatggattgaaaagccttccagagtacttagcacagtgggacaaacttaaatttgtagatgt taccgataataacttcacatgcgattgcggggtagagtggatacagaaaagaataaaacgcaaggatgcttggccatcga aacaaatagaaaacgatatgtatcatctcaactgtacggacaaattaggtcttgaaaaaattcggaattttgatttcaag tccctacgttgcgaaaaacatacggcgtctgcaccggccaagcgtatattgacaggattggtggcagccatcatcgctgt agcagtagttcttgtcgtctgcttagcatgcggattcaggaaaaagattatgaataaatacagacaattcaaatattccc gccacaaagacgaggcaccgtatacgatagcaaagtacagcgacttggacgcaagggaaacaaggtggacatgcaaaatg gccgtcatgggcattgattgggcgatgtatccacgacttatcgacgagatgactatatag |
|
Protein
| Protein ID | pfu_aug1.0_6866.1_45525.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6866.1_45525.t1 MEEAKPAVHRDHDGFSNTPEPVCSGKFDLHQSCNYVCYELCMFTRGTKNQDMTGNGLKSIEAEAFYGVGNLRRLTLTDNL LTSVPSETFKLIPNLKYLYIENNRISKLVNQTFSMLKNLTRLYLSHNKLSYIGDYVFKDVPIQYLWMIDCGLAEIPSVLD SLYDITDLDISLNNFSVIPSAVFFNLEKLVFLRISHIQGLTDVHADAFIGLDSLTSVHMTDCPNLKELPEKAFWKNQRLW SLDLRGNGLKSLPEYLAQWDKLKFVDVTDNNFTCDCGVEWIQKRIKRKDAWPSKQIENDMYHLNCTDKLGLEKIRNFDFK SLRCEKHTASAPAKRILTGLVAAIIAVAVVLVVCLACGFRKKIMNKYRQFKYSRHKDEAPYTIAKYSDLDARETRWTCKM AVMGIDWAMYPRLIDEMTI |
|