Gene
| Gene Model ID | pfu_aug1.0_6887.1_60145 |
|---|---|
| Locus | scaffold6887.1 : 47501 ... 62415 : - |
| To GenomeBrowser | scaffold6887.1:47501..62415 |
| Genes list of scaffold | scaffold6887.1 |
| Synonym | pfu_aug2.0_154.1_13697 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6887.1_60145.t1 | 2 | 1 | AATF-Che1 | 33 | 50 | 1.0e-19 | 71.0 | 0.38 | 1400.0 | -0.7 |
| pfu_aug1.0_6887.1_60145.t1 | 2 | 2 | AATF-Che1 | 80 | 164 | 1.0e-19 | 71.0 | 2.7e-23 | 1.0e-19 | 71.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6887.1_60145.t1 | gi|74194197|dbj|BAE24653.1| | unnamed protein product [Mus musculus] | 6.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6887.1_60145.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6887.1_60145.t1 atgtccatctgcgatgatgatcatgatgaggaggaggaggatgaatttgaagacgacagtgaggaagacgataatgagat acaagaaaatactggagaagacgataatgataactcaagtcatgatgagatggaggaggaggatgatagcgaggaagatg agtcagaagataatgaagatgaattagaagaagatgagggagggataagcagtttttctaatacagatgtacaaggggaa gtgcagaaaggtcaggccgccaaacaacaactagggctgtgggattccctgttggaaggcagaattagatttcagaagac aatcagccttgttaaccagctacctcaacctgatacatggacagagctggtagaagagggggaacaatcattacaacaac agttaattaatgtgcagtcacagttgaaagacctgctagacaaactaatacatgtacagactttgttattactgcagcat aacgagacagaacacatcatcactggtaataaagtggatgaccttttcaagtctttatttggagaacgcccaaaattcat gactgtggacgaaagatga |
|
Protein
| Protein ID | pfu_aug1.0_6887.1_60145.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6887.1_60145.t1 MSICDDDHDEEEEDEFEDDSEEDDNEIQENTGEDDNDNSSHDEMEEEDDSEEDESEDNEDELEEDEGGISSFSNTDVQGE VQKGQAAKQQLGLWDSLLEGRIRFQKTISLVNQLPQPDTWTELVEEGEQSLQQQLINVQSQLKDLLDKLIHVQTLLLLQH NETEHIITGNKVDDLFKSLFGERPKFMTVDER |
|