Gene
| Gene Model ID | pfu_aug1.0_6922.1_60156 |
|---|---|
| Locus | scaffold6922.1 : 19966 ... 26036 : + |
| To GenomeBrowser | scaffold6922.1:19966..26036 |
| Genes list of scaffold | scaffold6922.1 |
| Synonym | pfu_aug2.0_38.1_26726 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6922.1_60156.t1 | 1 | 1 | RRM_1 | 168 | 235 | 7.8e-17 | 60.6 | 2.9e-20 | 1.1e-16 | 60.2 |
| pfu_aug1.0_6922.1_60156.t1 | 1 | 1 | RRM_6 | 168 | 235 | 4.0e-10 | 39.5 | 1.6e-13 | 5.8e-10 | 39.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6922.1_60156.t1 | gi|62859395|ref|NP_001016035.1| | myelin expression factor 2 [Xenopus (Silurana) tropicalis] | 1.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 2 |
| maleGonad | 2 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6922.1_60156.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6922.1_60156.t1 atggggggaatgagtggaatgggaaatatgggatctgggatgtcctctatgggagggatggggatggatagcggcatggg actcgggggatccatgggtggaatgaactctatggggggaatgtcagggggaatggggggatctgggatgtctggagggg gaatgggaatgggaggaattggaggtatggggaattcacagatgtcagggatggggatgtctgggggaatgaatgatggc ttcagctccatgggatcagggggtatggggaacagcagctttgggggatcaggaatggggggtatgggagacaggatgag tgggatgggatctggacttggaaacaatagctttggaatgatggacaacatgggtctgggatctaattatgggggatcag gaaatagctcgtttggatcatctgacagaatgagtggaagggacagagataggggaagggatatgggaggaagggggcag acaaggcctgataactgtacagttatagttaagaatctgccttatgcaatcaaatggcaagacctgagggataaattcaa ggaagcaggtgatgtgaagtttgctgagatcaaagttgagaacggaagatcccagggctggggacttgtcagatatggta gtcccgaggatgcacaagaagctatcgactatttcaacagatccaagattgagggtcgggagatagatgtcaaactgtac cgctaa |
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Protein
| Protein ID | pfu_aug1.0_6922.1_60156.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6922.1_60156.t1 MGGMSGMGNMGSGMSSMGGMGMDSGMGLGGSMGGMNSMGGMSGGMGGSGMSGGGMGMGGIGGMGNSQMSGMGMSGGMNDG FSSMGSGGMGNSSFGGSGMGGMGDRMSGMGSGLGNNSFGMMDNMGLGSNYGGSGNSSFGSSDRMSGRDRDRGRDMGGRGQ TRPDNCTVIVKNLPYAIKWQDLRDKFKEAGDVKFAEIKVENGRSQGWGLVRYGSPEDAQEAIDYFNRSKIEGREIDVKLY R |
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