Gene
| Gene Model ID | pfu_aug1.0_6948.1_24110 |
|---|---|
| Locus | scaffold6948.1 : 1 ... 8204 : + |
| To GenomeBrowser | scaffold6948.1:1..8204 |
| Genes list of scaffold | scaffold6948.1 |
| Synonym | pfu_aug2.0_890.1_01225 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6948.1_24110.t1 | 6 | 1 | zf-H2C2_2 | 3 | 12 | 2.4e-17 | 62.2 | 0.0099 | 16.0 | 5.9 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 1 | zf-C2H2 | 3 | 23 | 4.8e-17 | 61.1 | 0.0017 | 2.9 | 8.4 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 1 | zf-C2H2_4 | 3 | 21 | 1.2e-13 | 50.3 | 0.0076 | 13.0 | 6.4 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 1 | zf-C2H2_jaz | 3 | 13 | 3.5e-07 | 30.1 | 0.23 | 380.0 | 1.4 |
| pfu_aug1.0_6948.1_24110.t1 | 5 | 1 | zf-met | 3 | 12 | 8.2e-06 | 25.8 | 0.12 | 200.0 | 2.4 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 2 | zf-H2C2_2 | 24 | 46 | 2.4e-17 | 62.2 | 0.18 | 300.0 | 1.9 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 2 | zf-C2H2 | 36 | 58 | 4.8e-17 | 61.1 | 1.7e-06 | 0.0027 | 17.9 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 2 | zf-C2H2_4 | 36 | 59 | 1.2e-13 | 50.3 | 1.3e-05 | 0.022 | 15.0 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 2 | zf-C2H2_jaz | 36 | 55 | 3.5e-07 | 30.1 | 2.0e-05 | 0.033 | 14.3 |
| pfu_aug1.0_6948.1_24110.t1 | 5 | 2 | zf-met | 36 | 55 | 8.2e-06 | 25.8 | 1.6e-06 | 0.0026 | 17.8 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 3 | zf-H2C2_2 | 50 | 82 | 2.4e-17 | 62.2 | 0.0037 | 6.1 | 7.3 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 3 | zf-C2H2 | 69 | 93 | 4.8e-17 | 61.1 | 9.7e-08 | 0.00016 | 21.8 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 3 | zf-C2H2_4 | 69 | 93 | 1.2e-13 | 50.3 | 1.4e-06 | 0.0023 | 18.1 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 3 | zf-C2H2_jaz | 76 | 91 | 3.5e-07 | 30.1 | 0.0021 | 3.4 | 7.9 |
| pfu_aug1.0_6948.1_24110.t1 | 5 | 3 | zf-met | 76 | 91 | 8.2e-06 | 25.8 | 0.0086 | 14.0 | 6.0 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 4 | zf-H2C2_2 | 85 | 106 | 2.4e-17 | 62.2 | 1.8e-09 | 3.0e-06 | 27.2 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 4 | zf-C2H2 | 99 | 122 | 4.8e-17 | 61.1 | 7.6e-05 | 0.12 | 12.7 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 4 | zf-C2H2_4 | 99 | 122 | 1.2e-13 | 50.3 | 8.9e-05 | 0.15 | 12.4 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 4 | zf-C2H2_jaz | 99 | 119 | 3.5e-07 | 30.1 | 0.00015 | 0.24 | 11.5 |
| pfu_aug1.0_6948.1_24110.t1 | 5 | 4 | zf-met | 99 | 119 | 8.2e-06 | 25.8 | 0.007 | 12.0 | 6.3 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 5 | zf-H2C2_2 | 114 | 138 | 2.4e-17 | 62.2 | 9.5e-07 | 0.0016 | 18.6 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 5 | zf-C2H2_4 | 129 | 151 | 1.2e-13 | 50.3 | 6.9e-07 | 0.0011 | 19.0 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 5 | zf-C2H2 | 130 | 151 | 4.8e-17 | 61.1 | 3.8e-07 | 0.00063 | 19.9 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 5 | zf-C2H2_jaz | 130 | 148 | 3.5e-07 | 30.1 | 0.00051 | 0.84 | 9.8 |
| pfu_aug1.0_6948.1_24110.t1 | 5 | 5 | zf-met | 130 | 148 | 8.2e-06 | 25.8 | 0.0026 | 4.3 | 7.6 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 6 | zf-H2C2_2 | 143 | 168 | 2.4e-17 | 62.2 | 1.7e-09 | 2.8e-06 | 27.3 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 6 | zf-C2H2 | 157 | 172 | 4.8e-17 | 61.1 | 0.0016 | 2.6 | 8.5 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 6 | zf-C2H2_4 | 157 | 172 | 1.2e-13 | 50.3 | 0.02 | 34.0 | 5.1 |
| pfu_aug1.0_6948.1_24110.t1 | 6 | 6 | zf-C2H2_jaz | 159 | 163 | 3.5e-07 | 30.1 | 0.97 | 1600.0 | -0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6948.1_24110.t1 | gi|297466984|ref|XP_002704828.1| | 8.0e-20 |
Transcript
| Transcript ID | pfu_aug1.0_6948.1_24110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6948.1_24110.t1 gagtagagtacagatgtgatgtttgcggcttcaccttccatgtcatagcaatgttacataaacacaaattcttcaagcac tatcacaaagagagtccgttagatcactttagatgtgaaacgtgccagagaagcttcagtaaacgataccatctcagaca acatctgttcaggcaccatggtattaaagtgggagcattcaagacatacaagtgtacgtttgaaggctgtggtaaggaat gtactacaagctctggtcttagatctcatatgagacgacataccaaggaaaagacattcaagtgtgaatactgcaatcag ctactcaagaccgatacgacatacaggaagcacatcaacaagatgcatcttgggatacgcccccatctttgtcagatctg tggtcagacgtttggagaggagtcagaattaaagtcacatatcagaaatctacactccagtgaaaaggaatttcagtgtg accactgcccttatgctacatctaacaaatcaacattatacaattatttcttgttggggctctatcggggctctatcgtg actcattccagttcaccttgggaacaagaatgcacgcgaatgttaggagaacgcgctgcgagtggaggagaatgcaaggc gaatgcgctgcgcatgtgccgcgagtttgaggcgaataagaattcagatgcaaatgttttaaacagtttgaagcattcgc gtcggtggtgtgaacagaggagaatgcaagagaacatgacacaatag |
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Protein
| Protein ID | pfu_aug1.0_6948.1_24110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6948.1_24110.t1 VEYRCDVCGFTFHVIAMLHKHKFFKHYHKESPLDHFRCETCQRSFSKRYHLRQHLFRHHGIKVGAFKTYKCTFEGCGKEC TTSSGLRSHMRRHTKEKTFKCEYCNQLLKTDTTYRKHINKMHLGIRPHLCQICGQTFGEESELKSHIRNLHSSEKEFQCD HCPYATSNKSTLYNYFLLGLYRGSIVTHSSSPWEQECTRMLGERAASGGECKANALRMCREFEANKNSDANVLNSLKHSR RWCEQRRMQENMTQ |
|