Gene
| Gene Model ID | pfu_aug1.0_6953.1_02352 |
|---|---|
| Locus | scaffold6953.1 : 51196 ... 59317 : + |
| To GenomeBrowser | scaffold6953.1:51196..59317 |
| Genes list of scaffold | scaffold6953.1 |
| Synonym | pfu_aug2.0_95.1_16903 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6953.1_02352.t1 | 2 | 1 | Pkinase | 8 | 268 | 0.0 | 216.9 | 0.0 | 0.0 | 216.6 |
| pfu_aug1.0_6953.1_02352.t1 | 1 | 1 | Pkinase_Tyr | 10 | 266 | 1.70006e-41 | 142.0 | 9.80909e-45 | 2.29995e-41 | 141.6 |
| pfu_aug1.0_6953.1_02352.t1 | 1 | 1 | Kinase-like | 134 | 258 | 1.2e-07 | 31.0 | 8.6e-11 | 2.1e-07 | 30.1 |
| pfu_aug1.0_6953.1_02352.t1 | 2 | 2 | Pkinase | 268 | 297 | 0.0 | 216.9 | 0.24 | 600.0 | -0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6953.1_02352.t1 | gi|260830605|ref|XP_002610251.1| | hypothetical protein BRAFLDRAFT_115429 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6953.1_02352.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6953.1_02352.t1 atgcccagcacgttggaggattttgaagtcctgtctactataggatcagggtcgtatggcacatgtaagaaaatacgacg gaaaaaggatggcaagatactggtgtggaaagaaatggaatatggaacgatgacagagtcggagaaactgatgctggtgt cggaagtcaacctgctccgagagctgaaacatcaacatatcgtacgatactacgacaggatcatagatagaagtaaaact accatctatatcatcatggagtattgtgacggtggggatctggctcagcttatatcctctagtagaaggacaggctcttt tcttgatgaggaatttatatggaagatgttaattcagataacgtcagcattaaaagaatgtcaccgacgtaagaacggta aagctgttctacatcgagaccttaaaccagctaacatattcctagatgccgataaaaacgtgaagttgggtgattttggt cttgccagggtgttgcatcacgaaacaagttttgccaaaacctacgtgggaacaccgtattatatgtcaccagagttagt gaacaacatgtcctacaacgagaagtctgacatctgggccatgggatgtatgttgtacgagttgtgtgccctccacccac ccttcactgcttccaatcagctcgatctcaacaggaaaatctgtgtgggcgattacagtagaattcctctacgctatacc gatgatctcaacgctattatatcaaaactactcagggtagaagtacacaaaaggccgagtatagaagatgtccttcatga ctcggtagttgtgaggaggataaagaggttggaaaggaagaattctcacgagaaagtggaagctcaagtagaaacaaaat ctagtcatgaatctctcaagtcnttgggaagcagagctcaaactctgggagagaagaatggaatcaaaggaggaggaact taa |
|
Protein
| Protein ID | pfu_aug1.0_6953.1_02352.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6953.1_02352.t1 MPSTLEDFEVLSTIGSGSYGTCKKIRRKKDGKILVWKEMEYGTMTESEKLMLVSEVNLLRELKHQHIVRYYDRIIDRSKT TIYIIMEYCDGGDLAQLISSSRRTGSFLDEEFIWKMLIQITSALKECHRRKNGKAVLHRDLKPANIFLDADKNVKLGDFG LARVLHHETSFAKTYVGTPYYMSPELVNNMSYNEKSDIWAMGCMLYELCALHPPFTASNQLDLNRKICVGDYSRIPLRYT DDLNAIISKLLRVEVHKRPSIEDVLHDSVVVRRIKRLERKNSHEKVEAQVETKSSHESLKXLGSRAQTLGEKNGIKGGGT |
|