Gene
| Gene Model ID | pfu_aug1.0_6978.1_60167 |
|---|---|
| Locus | scaffold6978.1 : 11361 ... 22945 : - |
| To GenomeBrowser | scaffold6978.1:11361..22945 |
| Genes list of scaffold | scaffold6978.1 |
| Synonym | pfu_aug2.0_120.1_00267 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6978.1_60167.t1 | 2 | 1 | EF-hand_7 | 43 | 87 | 1.1e-21 | 76.6 | 2.7e-07 | 0.00039 | 20.4 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 1 | EF-hand_8 | 44 | 90 | 5.6e-18 | 64.2 | 1.4e-08 | 2.1e-05 | 24.0 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 1 | EF-hand_1 | 67 | 90 | 1.0e-22 | 77.6 | 3.7e-09 | 5.5e-06 | 25.2 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 1 | EF-hand_6 | 67 | 91 | 2.4e-19 | 67.4 | 8.3e-08 | 0.00012 | 21.6 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 1 | EF-hand_5 | 68 | 86 | 3.0e-17 | 61.0 | 5.0e-08 | 7.5e-05 | 21.8 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 2 | EF-hand_8 | 100 | 127 | 5.6e-18 | 64.2 | 4.5e-06 | 0.0067 | 16.0 |
| pfu_aug1.0_6978.1_60167.t1 | 2 | 2 | EF-hand_7 | 101 | 171 | 1.1e-21 | 76.6 | 1.4e-17 | 2.1e-14 | 53.3 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 2 | EF-hand_1 | 102 | 128 | 1.0e-22 | 77.6 | 9.2e-11 | 1.4e-07 | 30.3 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 2 | EF-hand_6 | 105 | 127 | 2.4e-19 | 67.4 | 2.8e-07 | 0.00041 | 19.9 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 2 | EF-hand_5 | 105 | 125 | 3.0e-17 | 61.0 | 1.1e-06 | 0.0017 | 17.6 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 3 | EF-hand_1 | 150 | 172 | 1.0e-22 | 77.6 | 3.7e-08 | 5.5e-05 | 22.1 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 3 | EF-hand_6 | 150 | 174 | 2.4e-19 | 67.4 | 9.2e-08 | 0.00014 | 21.4 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 3 | EF-hand_5 | 150 | 171 | 3.0e-17 | 61.0 | 1.2e-07 | 0.00017 | 20.7 |
| pfu_aug1.0_6978.1_60167.t1 | 3 | 3 | EF-hand_8 | 152 | 172 | 5.6e-18 | 64.2 | 3.4e-07 | 0.00051 | 19.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6978.1_60167.t1 | gi|348513235|ref|XP_003444148.1| | PREDICTED: neurocalcin-delta B-like isoform X1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6978.1_60167.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6978.1_60167.t1 atgggtaacaagcctccgaaaaagctatcaccaacagagatcagggacctccaaaaggaggtggactttactggtgaaga aatcaacgactggtacaaagagtatatgagaagctgtagacacgggaaatacctcacagtgaaggaattctcagaagtgt actcaagtacattcggtggggacgccggggcgtttgcaaatcacgtttttcgaacttttgattctgacggagatggtaaa gtagacttcagagaatttctggtgggactgagtgttacagctagctcaaatctggaaaagaaactgagatgggcttttaa aatgtacgatatcgatggaaatgggcgcatctcaaaggatgaaatgttgtcattaatgacggccgtgtataaaatgacac cacagattaagaaaccatcagatgtaagtacacctgagaagatgacgaaaaaattgtttaaaaaactcgatacagacaaa aacggagaacttagctgggaggagttttatgagggagcgaggagagatcagctggtggtagccatgctggaactaagtaa ccttctgaagttcctggctgatactgctggtcaggaggtcgttgtcaagctgttcggcaagaacattgagaagctaggta aagccctggggagcacggcccaacaggctgggggtctattgttgggaggagctaaagatctggtgggaagcgtcggtgat gccttcaaagatctaggcggtaagctaacgtctctgacatcagatattggtcatggattggataactttgcatcgagtgt gtcgaacttcggtcatggattcgaacactctcttcagaacattgggaattctttgaccaatggagccactgatgccgcca atgctatagctcacactgcagaaaacgttggaaagcagatttcacatggtgtggaaaatattggtcactcaataggacat gcaatcggacatatatttggaagacgttctgtatgtcctaactgtgacaaaatcgaaggcaaaagctctcagcaaatcat tgatggaatttgtggatcagattacatgactaaacagaacggggtaatcacagagatcaaccacatgcagaacatctact ctgcttctgtcaacactaccattattcacaaagtcgagtatgatcccacctccattgatacctcccagggtgtccaattc actaaagtcttcatcacctacaccgtggacgggaaacccatccgtttcagctctggtgctcacctaagactgaccgatct acctacaatgtcagaaagtctgtccatggaaatctacgaagcctacgtctaa |
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Protein
| Protein ID | pfu_aug1.0_6978.1_60167.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6978.1_60167.t1 MGNKPPKKLSPTEIRDLQKEVDFTGEEINDWYKEYMRSCRHGKYLTVKEFSEVYSSTFGGDAGAFANHVFRTFDSDGDGK VDFREFLVGLSVTASSNLEKKLRWAFKMYDIDGNGRISKDEMLSLMTAVYKMTPQIKKPSDVSTPEKMTKKLFKKLDTDK NGELSWEEFYEGARRDQLVVAMLELSNLLKFLADTAGQEVVVKLFGKNIEKLGKALGSTAQQAGGLLLGGAKDLVGSVGD AFKDLGGKLTSLTSDIGHGLDNFASSVSNFGHGFEHSLQNIGNSLTNGATDAANAIAHTAENVGKQISHGVENIGHSIGH AIGHIFGRRSVCPNCDKIEGKSSQQIIDGICGSDYMTKQNGVITEINHMQNIYSASVNTTIIHKVEYDPTSIDTSQGVQF TKVFITYTVDGKPIRFSSGAHLRLTDLPTMSESLSMEIYEAYV |
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