Gene
| Gene Model ID | pfu_aug1.0_6982.1_60169 |
|---|---|
| Locus | scaffold6982.1 : 52866 ... 57709 : + |
| To GenomeBrowser | scaffold6982.1:52866..57709 |
| Genes list of scaffold | scaffold6982.1 |
| Synonym | pfu_aug2.0_797.1_24413 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6982.1_60169.t1 | 2 | 1 | Tim17 | 37 | 54 | 3.1e-09 | 36.9 | 0.57 | 8500.0 | -3.3 |
| pfu_aug1.0_6982.1_60169.t1 | 2 | 2 | Tim17 | 65 | 156 | 3.1e-09 | 36.9 | 3.8e-13 | 5.7e-09 | 36.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6982.1_60169.t1 | gi|78369414|ref|NP_001030425.1| | transmembrane protein 135 [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6982.1_60169.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6982.1_60169.t1 atgttttctagatttctggtggggagggatgaacttccagtgtcagtgttagcagaggaaggagagtcaacaaagaggaa acaaacctctggggcggggcttagtcagatagctactcatccattggtgcagaaagtcaacaggagtttacaggccacgc ccaaacatcccttgtgtcaacatagaaatggttgtttatattatgcattaaagggttttacaaagctgtttggtattggt tttgtggttcaaggtggcgttaagttgatcagctctttacccagaatattcaagcagccttcatctctacttcaagctct gaaacatagagacaacttcaaactgggtgcttttctaggatgcttctcagcaattttcaggctagttaactgtttactac gatgggttaggaacaaagatgatgagcttcatggaatgttagcgggtttcctagcaggatggtccatgctatggttcaaa agtacaacaatagcgttatatactgcctataagttagctgagattctatactttaagggaatatccaaagggatagtgcc atatatacgatatgcagacatcatcatatactccatatctacagcttatgtgttccatatagcggtgctagaacctcact gtttacgacctgcttattggaaattcctggtcaaggttacaggtgataggttttcaaagatgaacagaaagctattagag cctgtcagaccagatgcagccaagatgttcccggatttctggccagattacgatatgagatacactagccttgcacgaga gtcttacttcggaaacagatga |
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Protein
| Protein ID | pfu_aug1.0_6982.1_60169.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6982.1_60169.t1 MFSRFLVGRDELPVSVLAEEGESTKRKQTSGAGLSQIATHPLVQKVNRSLQATPKHPLCQHRNGCLYYALKGFTKLFGIG FVVQGGVKLISSLPRIFKQPSSLLQALKHRDNFKLGAFLGCFSAIFRLVNCLLRWVRNKDDELHGMLAGFLAGWSMLWFK STTIALYTAYKLAEILYFKGISKGIVPYIRYADIIIYSISTAYVFHIAVLEPHCLRPAYWKFLVKVTGDRFSKMNRKLLE PVRPDAAKMFPDFWPDYDMRYTSLARESYFGNR |
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