Gene
Gene Model ID | pfu_aug1.0_7.1_14636 |
---|---|
Locus | scaffold7.1 : 131954 ... 137715 : - |
To GenomeBrowser | scaffold7.1:131954..137715 |
Genes list of scaffold | scaffold7.1 |
Synonym | pfu_aug2.0_340.1_00632 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7.1_14636.t1 | 3 | 1 | SNARE_assoc | 15 | 21 | 3.2e-19 | 69.3 | 0.19 | 2800.0 | -1.6 |
pfu_aug1.0_7.1_14636.t1 | 3 | 2 | SNARE_assoc | 84 | 204 | 3.2e-19 | 69.3 | 2.2e-23 | 3.2e-19 | 69.3 |
pfu_aug1.0_7.1_14636.t1 | 3 | 3 | SNARE_assoc | 227 | 233 | 3.2e-19 | 69.3 | 0.83 | 12000.0 | -3.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7.1_14636.t1 | gi|198437777|ref|XP_002128025.1| | PREDICTED: transmembrane protein 41A-A-like [Ciona intestinalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_7.1_14636.t1 |
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Definition | - |
>pfu_aug1.0_7.1_14636.t1 atgggttctataatatggattccaattgttctgactgtttattcatcctatctgtattttctgtcggtgaacctgccaga gataaatgctgagaagtttgatggagtttcaaaagatgcattgaagttccccacatcactagaggatatttcctctctat caaagctcctcaccttatacaagcaagagcatctcttctacgtagttctactgttctgtagtgcctatgtatacaaacag acatttgccattcctggatctgtctttatgaatttactcggtggagctctgtttggagtccacgtggcatttccgttagt ttgtttgctgactgcagctggtgccacctgctgttatttcctgtcaagattttttgggagacaacacatactaaagtatt ttcctgagaaagtaaaagttatgcagaacaaggtagaggagaactacgacagcttgttctttttcctgttatttctaaga tttttcccgatgtcaccaaactggttcctgaacatggcttctccaatactcaatattcctgctcatctgtttttcttgtc tgttctcataggactgatgccatataattttatatgtgttcagacgggtagcatgttatctgagattcgttcattggatg atatattttcctcatggacattagcgaagctggctggtatagccatcatggcgttacttcctggaatgctcatacggaaa ctcaaagacaaaaacttgaagtcattgtag |
Protein
Protein ID | pfu_aug1.0_7.1_14636.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7.1_14636.t1 MGSIIWIPIVLTVYSSYLYFLSVNLPEINAEKFDGVSKDALKFPTSLEDISSLSKLLTLYKQEHLFYVVLLFCSAYVYKQ TFAIPGSVFMNLLGGALFGVHVAFPLVCLLTAAGATCCYFLSRFFGRQHILKYFPEKVKVMQNKVEENYDSLFFFLLFLR FFPMSPNWFLNMASPILNIPAHLFFLSVLIGLMPYNFICVQTGSMLSEIRSLDDIFSSWTLAKLAGIAIMALLPGMLIRK LKDKNLKSL |