Gene
| Gene Model ID | pfu_aug1.0_7.1_14647 |
|---|---|
| Locus | scaffold7.1 : 273926 ... 276296 : + |
| To GenomeBrowser | scaffold7.1:273926..276296 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7.1_14647.t1 | 1 | 1 | zf-RING_2 | 14 | 60 | 4.8e-07 | 29.4 | 7.8e-10 | 4.8e-07 | 29.4 |
| pfu_aug1.0_7.1_14647.t1 | 1 | 1 | zf-C3HC4 | 15 | 59 | 2.3e-09 | 36.7 | 3.8e-12 | 2.3e-09 | 36.7 |
| pfu_aug1.0_7.1_14647.t1 | 2 | 1 | zf-C3HC4_2 | 15 | 59 | 1.9e-07 | 30.9 | 3.1e-10 | 1.9e-07 | 30.9 |
| pfu_aug1.0_7.1_14647.t1 | 2 | 1 | zf-RING_5 | 15 | 60 | 2.4e-06 | 27.1 | 3.9e-09 | 2.4e-06 | 27.1 |
| pfu_aug1.0_7.1_14647.t1 | 1 | 1 | zf-RING_UBOX | 15 | 57 | 9.0e-06 | 25.3 | 3.3e-08 | 2.0e-05 | 24.1 |
| pfu_aug1.0_7.1_14647.t1 | 2 | 2 | zf-C3HC4_2 | 100 | 129 | 1.9e-07 | 30.9 | 0.34 | 210.0 | 2.0 |
| pfu_aug1.0_7.1_14647.t1 | 2 | 2 | zf-RING_5 | 100 | 127 | 2.4e-06 | 27.1 | 0.16 | 96.0 | 2.8 |
Transcript
| Transcript ID | pfu_aug1.0_7.1_14647.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7.1_14647.t1 atggcctcgtcgactgaaaaatcaaatgtagaacttactacctgttctatttgttttgagacttttaaaactcccaaata ttttccgtgtttacacagcttttgtgaaggatgtataaaaacttatattacaacgactttcgtacacccacagggtggag taaattgtcccgtgtgtcggatttttgtttccaaaccagaggatattagcttagaggaatggtcatcaaaactacctaca aaccatattctggtcagtcttattgatatgaatcaatcaaattcaaatgaaaaactatgttcggcttgttcaagggaaaa cgaaaccgaaagtgcttgttcgtggtgtattaactgtgccgagttattatgcaaggcatgtgaccgctcgcatcgtagaa acaaatacaccaacacacataacctagttgatctttcaaatcctcaaacgtccgaaatgaagttacaagaagctgatatg caatgtacagaacatccggataaaaatgtagaggcgtactgtagagatcattccgagatttgttgtatgacatgcgcatt cctcaagcacagaaattgtaaaaatgttgggtccatacaagatgcagcgcaggagatgaagaaatcaaatgatgtagaaa cctttgcagattctctaaacgaatttaagaactctttggatgagatgttacaatacacgacaaaaaacttgcaagacttc gacaaagacatcgaggaaatgaagtcagatgtcgaaacattatttacaaagttatccaatcatctgagtcagttgaaagc acacattatgtctgaaatatcaaagattgagaaagaggtccgaccagagatagaggataaacatgaagaaatcaaatgta aaatatcgactatagagaatgacttagccctatttcagaccaacatgaagtacgccccgcccgcccagttcctacaagcc atcgaaaaactaatagagcaaaggttggtactagaaaagtttgtaaatgagggaagcctaaagttacaggaaatccgagt tgcatttgatgtcaacaagaagatactggagatcgaaaaaggcatccaagtatttggagaagttaatattagaaggacaa ataaaacaggcgtgcaaaggtctacggacggacatgtaaacatgagctcagtggagccatctttgacatcagagtttgat atattagtgccatctccggtgacaggaataacagtattggagaacggtcatgttctgctgtccgtatactataagcagac catagagctccgtgaccaccagtgttccagtatcctatcctcattttcatttcaaggacatccacgtggggtcaagatga ccagtgatacagagggcgctgtagctgtacaaggatgtggactgatcctatttcatatacaaaacaatcggatcaaacct ttaaacaaaatcaggacaaacgtaaattgtgactttgtgcatcaccagggtaaatattacatgggatgtgacaagaatat cgccgtatatgatagtactcgccgcaaggtccgtgatatatcagtggataagaacgtgggctacatgacactccgtgacc acacatcactgtgttatacagtgtggggaggacgtgagttgtattgtatttctatggtcggtaccccgttgttcacgtac tctcatgacaagctacaggacacggcaggtgtcacaatggatcacaccggctatatttatatatgtggttatgagtctaa gaacgtacatcagctgacccatgatgggaagctacagaggattatatttgacagcctaccatctccgccgttctgtgtct gtgttaacaaacataatgacaaagctctgattggatgcggagctaaggtccagctgtatgaactgaaataa |
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Protein
| Protein ID | pfu_aug1.0_7.1_14647.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7.1_14647.t1 MASSTEKSNVELTTCSICFETFKTPKYFPCLHSFCEGCIKTYITTTFVHPQGGVNCPVCRIFVSKPEDISLEEWSSKLPT NHILVSLIDMNQSNSNEKLCSACSRENETESACSWCINCAELLCKACDRSHRRNKYTNTHNLVDLSNPQTSEMKLQEADM QCTEHPDKNVEAYCRDHSEICCMTCAFLKHRNCKNVGSIQDAAQEMKKSNDVETFADSLNEFKNSLDEMLQYTTKNLQDF DKDIEEMKSDVETLFTKLSNHLSQLKAHIMSEISKIEKEVRPEIEDKHEEIKCKISTIENDLALFQTNMKYAPPAQFLQA IEKLIEQRLVLEKFVNEGSLKLQEIRVAFDVNKKILEIEKGIQVFGEVNIRRTNKTGVQRSTDGHVNMSSVEPSLTSEFD ILVPSPVTGITVLENGHVLLSVYYKQTIELRDHQCSSILSSFSFQGHPRGVKMTSDTEGAVAVQGCGLILFHIQNNRIKP LNKIRTNVNCDFVHHQGKYYMGCDKNIAVYDSTRRKVRDISVDKNVGYMTLRDHTSLCYTVWGGRELYCISMVGTPLFTY SHDKLQDTAGVTMDHTGYIYICGYESKNVHQLTHDGKLQRIIFDSLPSPPFCVCVNKHNDKALIGCGAKVQLYELK |
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