Gene
| Gene Model ID | pfu_aug1.0_7.1_14662 |
|---|---|
| Locus | scaffold7.1 : 447566 ... 462865 : + |
| To GenomeBrowser | scaffold7.1:447566..462865 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | pfu_aug2.0_332.1_07368 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715676 (MgC1q97). 373 bits, 1e-101 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7.1_14662.t1 | 3 | 1 | C1q | 157 | 281 | 0.0 | 255.2 | 5.0e-26 | 1.2e-22 | 80.2 |
| pfu_aug1.0_7.1_14662.t1 | 3 | 2 | C1q | 300 | 428 | 0.0 | 255.2 | 2.0e-25 | 4.9e-22 | 78.2 |
| pfu_aug1.0_7.1_14662.t1 | 3 | 3 | C1q | 450 | 575 | 0.0 | 255.2 | 5.5e-33 | 1.4e-29 | 102.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7.1_14662.t1 | gi|325504493|emb|CBX41746.1| | putative C1q domain containing protein MgC1q97 [Mytilus galloprovincialis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7.1_14662.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7.1_14662.t1 atgatccgcacgtccgttcccgaaaactaccgtccggatccggaacgcggatttccggattatcggatcagtttttgcac taangtaacccattattttattacattcattcgaggaaaaagaaccaagaatgttctggtcacgattgtggtatatttga acattgtgaaaggcacagagaacaatcttttgttggatggttcaaatggtctacgacagaatatcatcgaccattctgga gagtgggacatcatagtatattacgagttcaccatatcgtccgtaccacttcaatgttttcccatgacgatgtttgaatt cgatgtttttctgtgggtgcttcaatctagtcttgtcagacatgtcgtacagagagataagaaaagatcggtaaagacag tcagcacaatctgtagtcttattacaggagccatagcacaaccacaaaaccctccacaaattgtgggtttcactcttgga cagacaagtcatctacacataacaaaaggggatagaattgtctacaataagaacataacagaaattggaacgaatgttga tccgacgtccggtgttttcacatgccagattcctgggttgtacgtgttctccatgtacagtttgacaagaagcgatggtg aattatggctagagctcatgaagaacaacgagcttgtggcatcaatttatgcctatacctatgctgattatgcagatgct ggtaatgcagctgtactaaaactacagaagggcgacacggtgtacgtcaaagctcatgatgattatgacaactccttgta cgggggagcgtcggagatatacacaacacttaccggcgaactggtattccctgatgctaaagaactggattccgccaatg ctgtaagcgctgtgggtttcactgcagctttgtctgtgaatgcatccttaccaaacggaactcaagtagtatatgatcat gtggtcaccaatgtctccccgcaaggcggcggatatgacgcaacaaccggaactttcacagcaccaattgacggcgccta cgtattccatttctatgctgttgctcattccagcgaggaattctggttagagctgttccataacaatgactttgttgagt catcatacggttacacaagtggttcctacgccgatgccggcaatacagccgtgcttcaccttaagaaaggagacaccgtc tacgtaaaggcgcgtccgggacatagcgtgcagctttatggggatagcgacgagctctatactactttctcaggggctct gttgtcccctgctgtgatagccacacaagctggaggaggtgtgtcaaatcctggtcaacaagaaatagccttttctgtcg gactgacacacaacttcgcctcatcaaatggtgacaaggtattattcaatcgggtgttctcaaatcttggacaaaagtac gatatcaacacaggaattttcacagctcccgtcaccggtgtctatgtattccactatcacgtgctcgcccaatatgcaca ggaagtctgggttgaactgatgcataactaccactacatcaacactgcatacggacatacctccaatagttatggagttg gaggtaatgccgcggtcattgaactgacgtctggcgaccaagtgtacctagatattggaaaacacgattccctcctttat ggcggaactgacgaagtttactgcaccttttctgggtatcttctggcgccacttccaaacttccatccagttgttggcta a |
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Protein
| Protein ID | pfu_aug1.0_7.1_14662.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7.1_14662.t1 MIRTSVPENYRPDPERGFPDYRISFCTXVTHYFITFIRGKRTKNVLVTIVVYLNIVKGTENNLLLDGSNGLRQNIIDHSG EWDIIVYYEFTISSVPLQCFPMTMFEFDVFLWVLQSSLVRHVVQRDKKRSVKTVSTICSLITGAIAQPQNPPQIVGFTLG QTSHLHITKGDRIVYNKNITEIGTNVDPTSGVFTCQIPGLYVFSMYSLTRSDGELWLELMKNNELVASIYAYTYADYADA GNAAVLKLQKGDTVYVKAHDDYDNSLYGGASEIYTTLTGELVFPDAKELDSANAVSAVGFTAALSVNASLPNGTQVVYDH VVTNVSPQGGGYDATTGTFTAPIDGAYVFHFYAVAHSSEEFWLELFHNNDFVESSYGYTSGSYADAGNTAVLHLKKGDTV YVKARPGHSVQLYGDSDELYTTFSGALLSPAVIATQAGGGVSNPGQQEIAFSVGLTHNFASSNGDKVLFNRVFSNLGQKY DINTGIFTAPVTGVYVFHYHVLAQYAQEVWVELMHNYHYINTAYGHTSNSYGVGGNAAVIELTSGDQVYLDIGKHDSLLY GGTDEVYCTFSGYLLAPLPNFHPVVG |
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