Gene
| Gene Model ID | pfu_aug1.0_7.1_14675 |
|---|---|
| Locus | scaffold7.1 : 565611 ... 578060 : - |
| To GenomeBrowser | scaffold7.1:565611..578060 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | pfu_aug2.0_1921.1_05316 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7.1_14675.t1 | 1 | 1 | Arf | 21 | 178 | 2.1e-11 | 43.3 | 1.8e-14 | 2.7e-11 | 43.0 |
| pfu_aug1.0_7.1_14675.t1 | 1 | 1 | GTP_EFTU | 22 | 177 | 8.8e-09 | 35.0 | 7.9e-11 | 1.2e-07 | 31.3 |
| pfu_aug1.0_7.1_14675.t1 | 1 | 1 | Ras | 23 | 179 | 0.0 | 184.6 | 0.0 | 0.0 | 184.4 |
| pfu_aug1.0_7.1_14675.t1 | 1 | 1 | Miro | 23 | 137 | 3.0e-20 | 72.8 | 2.9e-23 | 4.3e-20 | 72.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7.1_14675.t1 | gi|145251179|ref|XP_001397103.1| | Ras-related protein Rab-6A [Aspergillus niger CBS 513.88] | 8.00141e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7.1_14675.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7.1_14675.t1 atggtagatcgaaaaaatgacaatcttgattgtctcagtataaaatgcgatgacgtcatcaaggtcaaggtcgttgtcat tggagatgtctcagttggaaaaacttcacttgcaactagatttacaaaacaagtttttgatgaaagagctagtcatacaa tcggagccagttactatgtacgaacgatcgagatagaggacagaagggttctattccagatttgggatacggcgggccag gagaggttccggagcttagtgcctatgtacttaagagacacaaaaatcgcaataattgtatatgatatatcatctaaaaa atcctttgagagtatggaccattggaaaagagagttgtctgccagtgctccctcggatactatagtggctcttgtaggaa ataaatgtgatttacatctgaagagggaagtggattctaagcatggaagagcatacgcaactaggcatggtatgatgttt ctggaaacctctgcaaaattaggcaccaacattgatgagcttttccaccacttaggagtttctgttgccgaaaacacact ctcattttcttcattggacaagacacctatagacgttagaaggattacaagaccaataaacatttcaccgaaggaggaag agactaaaagcagatgttgtcgtagtggacactaa |
|
Protein
| Protein ID | pfu_aug1.0_7.1_14675.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7.1_14675.t1 MVDRKNDNLDCLSIKCDDVIKVKVVVIGDVSVGKTSLATRFTKQVFDERASHTIGASYYVRTIEIEDRRVLFQIWDTAGQ ERFRSLVPMYLRDTKIAIIVYDISSKKSFESMDHWKRELSASAPSDTIVALVGNKCDLHLKREVDSKHGRAYATRHGMMF LETSAKLGTNIDELFHHLGVSVAENTLSFSSLDKTPIDVRRITRPINISPKEEETKSRCCRSGH |
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