Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_70.1_07357
Locus scaffold70.1 : 153008 ... 167975 : -
To GenomeBrowser scaffold70.1:153008..167975
Genes list of scaffold scaffold70.1
Synonym pfu_aug2.0_845.1_17883

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_70.1_07357.t1 3 1 Nup35_RRM 55 131 6.1e-07 29.1 6.8e-05 0.17 11.6
pfu_aug1.0_70.1_07357.t1 3 1 RRM_1 62 132 0.0 220.0 3.3e-25 8.0e-22 76.6
pfu_aug1.0_70.1_07357.t1 3 1 RRM_6 63 129 1.68156e-44 149.6 1.1e-16 2.6e-13 49.7
pfu_aug1.0_70.1_07357.t1 3 1 RRM_5 76 136 2.0e-30 104.4 1.5e-14 3.6e-11 42.7
pfu_aug1.0_70.1_07357.t1 3 2 RRM_1 148 214 0.0 220.0 2.3e-22 5.6e-19 67.5
pfu_aug1.0_70.1_07357.t1 3 2 RRM_6 148 210 1.68156e-44 149.6 5.6e-15 1.4e-11 44.2
pfu_aug1.0_70.1_07357.t1 3 2 Nup35_RRM 149 214 6.1e-07 29.1 0.00046 1.1 9.0
pfu_aug1.0_70.1_07357.t1 3 2 RRM_5 164 223 2.0e-30 104.4 2.2e-09 5.5e-06 26.1
pfu_aug1.0_70.1_07357.t1 3 3 RRM_1 299 368 0.0 220.0 6.9e-24 1.7e-20 72.4
pfu_aug1.0_70.1_07357.t1 3 3 RRM_6 299 368 1.68156e-44 149.6 1.6e-17 4.1e-14 52.3
pfu_aug1.0_70.1_07357.t1 3 3 Nup35_RRM 300 345 6.1e-07 29.1 0.011 27.0 4.5
pfu_aug1.0_70.1_07357.t1 3 3 RRM_5 313 372 2.0e-30 104.4 2.6e-11 6.4e-08 32.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_70.1_07357.t1 gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_70.1_07357.t1
Definition-
>pfu_aug1.0_70.1_07357.t1
atgatctccttcaccaacatgatgagtttaccacaacagaaactaattagtcaacaacctaacctagcagagctgcagat
ggaccatggaccacccactcacgcactgcaccaccaaaatgggggtaccacctccccctcctccacgggctcacagaccg
atgacaacactagtaaaaccaacctcatagtaaactatctaccacaaaccatgactcaggaggagatccgggctctcttc
tctagtatcggtgaagtagaaagctgcaagcttatccgtgataaacctactggacaaagtctaggatatggatttgtcaa
ctacaaaaatccagcggacgcagagaaagccatcaacaccctaaatggtctacgactgcagaacaaacttattaaggttt
cattagctcgcccaagctgcgagagtattaaaggagcaaacctatacattagcggactacccaagtccttgactcagttg
gacctagagaaattgttttcagattgtgggaacattatcacttccagaatactttatgaccaaaatacaggtctgtccaa
gggggtcggtttcatacgctttgaccaacgagtagaggcagagagggccatccagaagctgaacggtacaattccagagg
gagcaactgaaccaattacagtcaagtttgcaaactcaccaagttccaacaagaacggagcagctcttacaccactgaca
ttagcaccatatttaccacaaacacgcaggttactaggaccaattcatcacccatctagtcgattcagatactctccatt
ggatcccggctccatattgggaaccaccaacaccattatccccacggcaacggctgcagctgcagggagcgcactaaacg
gggctggatggtgtatctttgtttacaacttagcgcctgaaacggaggacagtactttatggcagttgtttggcccgttc
ggagctgtgcaaaatgtcaaggtcattcgagatttccaaactcagaagtgcaaaggatttggctttgtaaccatgacaaa
ctatgacgaagctttggttgccatacagagtttgaatggatttgctctgggaaaccgggttcttcaagtctcattcaaga
caaacaaatgcaagtcataa

Protein
Protein IDpfu_aug1.0_70.1_07357.t1
Definition-
>pfu_aug1.0_70.1_07357.t1
MISFTNMMSLPQQKLISQQPNLAELQMDHGPPTHALHHQNGGTTSPSSTGSQTDDNTSKTNLIVNYLPQTMTQEEIRALF
SSIGEVESCKLIRDKPTGQSLGYGFVNYKNPADAEKAINTLNGLRLQNKLIKVSLARPSCESIKGANLYISGLPKSLTQL
DLEKLFSDCGNIITSRILYDQNTGLSKGVGFIRFDQRVEAERAIQKLNGTIPEGATEPITVKFANSPSSNKNGAALTPLT
LAPYLPQTRRLLGPIHHPSSRFRYSPLDPGSILGTTNTIIPTATAAAAGSALNGAGWCIFVYNLAPETEDSTLWQLFGPF
GAVQNVKVIRDFQTQKCKGFGFVTMTNYDEALVAIQSLNGFALGNRVLQVSFKTNKCKS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495