Gene
| Gene Model ID | pfu_aug1.0_70.1_07357 |
|---|---|
| Locus | scaffold70.1 : 153008 ... 167975 : - |
| To GenomeBrowser | scaffold70.1:153008..167975 |
| Genes list of scaffold | scaffold70.1 |
| Synonym | pfu_aug2.0_845.1_17883 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_70.1_07357.t1 | 3 | 1 | Nup35_RRM | 55 | 131 | 6.1e-07 | 29.1 | 6.8e-05 | 0.17 | 11.6 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 1 | RRM_1 | 62 | 132 | 0.0 | 220.0 | 3.3e-25 | 8.0e-22 | 76.6 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 1 | RRM_6 | 63 | 129 | 1.68156e-44 | 149.6 | 1.1e-16 | 2.6e-13 | 49.7 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 1 | RRM_5 | 76 | 136 | 2.0e-30 | 104.4 | 1.5e-14 | 3.6e-11 | 42.7 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 2 | RRM_1 | 148 | 214 | 0.0 | 220.0 | 2.3e-22 | 5.6e-19 | 67.5 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 2 | RRM_6 | 148 | 210 | 1.68156e-44 | 149.6 | 5.6e-15 | 1.4e-11 | 44.2 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 2 | Nup35_RRM | 149 | 214 | 6.1e-07 | 29.1 | 0.00046 | 1.1 | 9.0 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 2 | RRM_5 | 164 | 223 | 2.0e-30 | 104.4 | 2.2e-09 | 5.5e-06 | 26.1 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 3 | RRM_1 | 299 | 368 | 0.0 | 220.0 | 6.9e-24 | 1.7e-20 | 72.4 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 3 | RRM_6 | 299 | 368 | 1.68156e-44 | 149.6 | 1.6e-17 | 4.1e-14 | 52.3 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 3 | Nup35_RRM | 300 | 345 | 6.1e-07 | 29.1 | 0.011 | 27.0 | 4.5 |
| pfu_aug1.0_70.1_07357.t1 | 3 | 3 | RRM_5 | 313 | 372 | 2.0e-30 | 104.4 | 2.6e-11 | 6.4e-08 | 32.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_70.1_07357.t1 | gi|143346991|gb|ABO93208.1| | Elav [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_70.1_07357.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_70.1_07357.t1 atgatctccttcaccaacatgatgagtttaccacaacagaaactaattagtcaacaacctaacctagcagagctgcagat ggaccatggaccacccactcacgcactgcaccaccaaaatgggggtaccacctccccctcctccacgggctcacagaccg atgacaacactagtaaaaccaacctcatagtaaactatctaccacaaaccatgactcaggaggagatccgggctctcttc tctagtatcggtgaagtagaaagctgcaagcttatccgtgataaacctactggacaaagtctaggatatggatttgtcaa ctacaaaaatccagcggacgcagagaaagccatcaacaccctaaatggtctacgactgcagaacaaacttattaaggttt cattagctcgcccaagctgcgagagtattaaaggagcaaacctatacattagcggactacccaagtccttgactcagttg gacctagagaaattgttttcagattgtgggaacattatcacttccagaatactttatgaccaaaatacaggtctgtccaa gggggtcggtttcatacgctttgaccaacgagtagaggcagagagggccatccagaagctgaacggtacaattccagagg gagcaactgaaccaattacagtcaagtttgcaaactcaccaagttccaacaagaacggagcagctcttacaccactgaca ttagcaccatatttaccacaaacacgcaggttactaggaccaattcatcacccatctagtcgattcagatactctccatt ggatcccggctccatattgggaaccaccaacaccattatccccacggcaacggctgcagctgcagggagcgcactaaacg gggctggatggtgtatctttgtttacaacttagcgcctgaaacggaggacagtactttatggcagttgtttggcccgttc ggagctgtgcaaaatgtcaaggtcattcgagatttccaaactcagaagtgcaaaggatttggctttgtaaccatgacaaa ctatgacgaagctttggttgccatacagagtttgaatggatttgctctgggaaaccgggttcttcaagtctcattcaaga caaacaaatgcaagtcataa |
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Protein
| Protein ID | pfu_aug1.0_70.1_07357.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_70.1_07357.t1 MISFTNMMSLPQQKLISQQPNLAELQMDHGPPTHALHHQNGGTTSPSSTGSQTDDNTSKTNLIVNYLPQTMTQEEIRALF SSIGEVESCKLIRDKPTGQSLGYGFVNYKNPADAEKAINTLNGLRLQNKLIKVSLARPSCESIKGANLYISGLPKSLTQL DLEKLFSDCGNIITSRILYDQNTGLSKGVGFIRFDQRVEAERAIQKLNGTIPEGATEPITVKFANSPSSNKNGAALTPLT LAPYLPQTRRLLGPIHHPSSRFRYSPLDPGSILGTTNTIIPTATAAAAGSALNGAGWCIFVYNLAPETEDSTLWQLFGPF GAVQNVKVIRDFQTQKCKGFGFVTMTNYDEALVAIQSLNGFALGNRVLQVSFKTNKCKS |
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