Gene
| Gene Model ID | pfu_aug1.0_7004.1_31315 |
|---|---|
| Locus | scaffold7004.1 : 3987 ... 23534 : - |
| To GenomeBrowser | scaffold7004.1:3987..23534 |
| Genes list of scaffold | scaffold7004.1 |
| Synonym | pfu_aug2.0_38.1_26723 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7004.1_31315.t1 | 2 | 1 | MIB_HERC2 | 592 | 618 | 5.4e-11 | 42.2 | 6.2e-06 | 0.046 | 13.6 |
| pfu_aug1.0_7004.1_31315.t1 | 2 | 2 | MIB_HERC2 | 622 | 676 | 5.4e-11 | 42.2 | 3.1e-11 | 2.3e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7004.1_31315.t1 | gi|260834997|ref|XP_002612496.1| | hypothetical protein BRAFLDRAFT_75382 [Branchiostoma floridae] | 2.0e-18 |
Transcript
| Transcript ID | pfu_aug1.0_7004.1_31315.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7004.1_31315.t1 ctcggtatcatgggaaacgaaaatggaaagcagcgagctcaggataaaacatcattagtcaataaaggggatgatttgta caaagagaaaggaaaaggtgaaagctctgtcgatttggatttttcaaacgtagggcatccagagaaatcaagtgaacaag tgagcctacctctgcagtcctcggtgagagagaaagagagtgaacaattcagccaacaacccaatattgttgagaaatca aagagaccgtctgaagaattcacaaaaagtaaactcgcatcgtcattgagtgatataccgagacagcagagtgaaactgt gtcgtctgtcagtccaaggcatcattttgcagacgtacctgtttacgggaagaactatttcactcgtcaagatgagagct tcgtaaatgatatttcttgggatttagaggaacaaccgctcactttaaacaaagttctagataggactgtaagaacagaa ttgcaactgaagagggatgagccggacgcaagtgctcaaaattcaagattgctgcatgatagagttgactcgttggaatc tccagcaagtcagcatctcgcaggcgacaggcattcagttgtctcccttacggacaatggaaacagggacatttctgtcc agattcgacagaccctcgaggcccagaaactttcattgaaatatgacttactgtcaataaaacctgcatataaatttgaa tttacagaattggaatttgctttggaatccttgcaaacaagatcagaaaagaaagacatagctatagcagttctttctga cgttgtcgataaactgaccaatcaaattgatcttctgacaaatgctgcagagaacagaagtcaagtctcggacatagatt gcgcagaccccgactccgaatcgactagtcccgttagtgagacacctgctcaacaagacgacgagaatgaagtggggtta gaggaaacggttgtatgtactaaaagggaggaggaacccaaggagtcccagaccagacgtcagccaaaagaagctgtgaa caccacaagatcagaaaatagacgcaatgaggacgtcgtgaaaagcattcatattttcgtagcattaccagatccggtac ccgttcaggaacagcctataaaacatgtgagcttgggacactggatagatattgctaacgaagaaatcgcaaatggtaaa gctttctcagtgggtaatggttgtggtccgtgcacggtgctatgttttgatgtgtcggacagtatgaagggggatccatt caaacacatgatcatccttgggctgcggtttgtaaaggggatagaaaagagccaacatacacaggagaaagaaaaaattg cactcgttacgttcggacatgaaacaaaagtaataagtcatctgtcaattgattacagcactctaaaggaaaagataatg aagccgcataagacggtgccatcccgtgtcatctttttcacggatggattagttacccaatctgccataacgggtggtcc tgatatgtttagtagaacagaaaatttggcgaaactcatggaaattatgatggtgacaaagttaaaagaggccaagaaag caggaaaagagtttgaattgccagacgatctcacaagtgatgatatggacgagctccaggagttgatgagatttgatccc tccgtcactgttgacgactctgatgagagtgggagtgagcaaggagatggtcaaacagcaaacagtgagaacgatcctaa catgccgccgttagggacaagggtccggaggggtccggactggaacagtaactgggaccaccaggactccaatggaccgg gtacagtggtcagtcataccaagaaaggtcccgactggagagacaacgataaagatggaggggcggggagtgtgggggcc gtcttcaggaaacaccatgacggaagtgtcggggtgcgatggcccagtggtattatgagaaggtataaattcggaaaggg aggatttttcgaggtcaaaatttgtgatccctatgacccggaagtccaggctgctgtggcgtcaggtgggaagactaaga tttctctgaaggatccaacgttagatgatacggtaaatgaagaggatgtcaagaaaaaatcaacagcacatgcgcagaag aacacttccatagatgaaatgaacaagcgtaatgctatgaagcaaaccattggtgaaacaagtggcagaaatgcgacgga agagaacaaacaaaacgtgtcaaattttgatgaaaagacacaaacagttgacaaatccgtcgaagagatgaataggcgaa atacagtccaaaataaatcacctggaaaatcaagtacaagtcttgttgaagaaatgaatatgcgcaacgcaaataaagga ccccctgacggattgggtagagatgatactgacatagacggccctaaagaagatgtagacctcacagacgatggctacgc caaggaactgggtgggattaaagaggttgtcattccggtagataagcgaggaaacgacaagtccgtccactcagattgta cggaagaaatggatacaacgcttgacatgacgaataaagatgtcaggacgaacgaaaacctaacagaccaaacacagtca gacaaacacggatcaatgcacgaatcaagaagagatggcagtgatggtcaaaactctgaaattcgtaatgctaacgaaaa tctgcttggtgctaaaccaaaggttcctacgaaaggtcaagttaatatgacagacacaatgaaagaaggacagatgcgac aagacgtgcatgaagttcgcacaaaaatgaatggtaaaacagtgaaatctgaaaaagagaggaaaaaagacaatgttatg ctggcgacatcattaagaacatcatcttttgatgaaccagatgaggaggagatcacgaatgtttttacacctccacagat tacacaagatcacgtgaccacagaatccaaaaatagaacgggaactctgagtacaatgggcaatgtatcaaatattagta caaactcggatttacagaaaagttcaaacctctccgatttgaaagacagtaatacgggtgaccttgacctagatggaggt gaccatgaccttagttttgagcataattctgtaccgtcccctgttgcatctgacgatgggtctagtcggaaaatgtcgat gacgtcatctggcacgcagtcagtagtcgaggatctcagcagttccttttcctctgaagcatcaagtcattcaagggaag aggatgcagatggccaacaaggtaaaggttttcatattttcatgcgcatatctatatcagtaatattcaatgaatga |
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Protein
| Protein ID | pfu_aug1.0_7004.1_31315.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7004.1_31315.t1 LGIMGNENGKQRAQDKTSLVNKGDDLYKEKGKGESSVDLDFSNVGHPEKSSEQVSLPLQSSVREKESEQFSQQPNIVEKS KRPSEEFTKSKLASSLSDIPRQQSETVSSVSPRHHFADVPVYGKNYFTRQDESFVNDISWDLEEQPLTLNKVLDRTVRTE LQLKRDEPDASAQNSRLLHDRVDSLESPASQHLAGDRHSVVSLTDNGNRDISVQIRQTLEAQKLSLKYDLLSIKPAYKFE FTELEFALESLQTRSEKKDIAIAVLSDVVDKLTNQIDLLTNAAENRSQVSDIDCADPDSESTSPVSETPAQQDDENEVGL EETVVCTKREEEPKESQTRRQPKEAVNTTRSENRRNEDVVKSIHIFVALPDPVPVQEQPIKHVSLGHWIDIANEEIANGK AFSVGNGCGPCTVLCFDVSDSMKGDPFKHMIILGLRFVKGIEKSQHTQEKEKIALVTFGHETKVISHLSIDYSTLKEKIM KPHKTVPSRVIFFTDGLVTQSAITGGPDMFSRTENLAKLMEIMMVTKLKEAKKAGKEFELPDDLTSDDMDELQELMRFDP SVTVDDSDESGSEQGDGQTANSENDPNMPPLGTRVRRGPDWNSNWDHQDSNGPGTVVSHTKKGPDWRDNDKDGGAGSVGA VFRKHHDGSVGVRWPSGIMRRYKFGKGGFFEVKICDPYDPEVQAAVASGGKTKISLKDPTLDDTVNEEDVKKKSTAHAQK NTSIDEMNKRNAMKQTIGETSGRNATEENKQNVSNFDEKTQTVDKSVEEMNRRNTVQNKSPGKSSTSLVEEMNMRNANKG PPDGLGRDDTDIDGPKEDVDLTDDGYAKELGGIKEVVIPVDKRGNDKSVHSDCTEEMDTTLDMTNKDVRTNENLTDQTQS DKHGSMHESRRDGSDGQNSEIRNANENLLGAKPKVPTKGQVNMTDTMKEGQMRQDVHEVRTKMNGKTVKSEKERKKDNVM LATSLRTSSFDEPDEEEITNVFTPPQITQDHVTTESKNRTGTLSTMGNVSNISTNSDLQKSSNLSDLKDSNTGDLDLDGG DHDLSFEHNSVPSPVASDDGSSRKMSMTSSGTQSVVEDLSSSFSSEASSHSREEDADGQQGKGFHIFMRISISVIFNE |
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