Gene
| Gene Model ID | pfu_aug1.0_7021.1_02366 |
|---|---|
| Locus | scaffold7021.1 : 22806 ... 24876 : + |
| To GenomeBrowser | scaffold7021.1:22806..24876 |
| Genes list of scaffold | scaffold7021.1 |
| Synonym | pfu_aug2.0_321.1_03993 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Delilah |
| Description | Best hit to EAX04750 heart and neural crest derivatives expressed 2, isoform CRA_b [Homo sapiens] with 9e-13 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7021.1_02366.t1 | 1 | 1 | HLH | 133 | 186 | 1.3e-16 | 60.0 | 2.6e-20 | 3.9e-16 | 58.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7021.1_02366.t1 | gi|225711932|gb|ACO11812.1| | Neurogenic differentiation factor 1 [Lepeophtheirus salmonis] | 1.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7021.1_02366.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7021.1_02366.t1 atgctgaaggatcattgtcgttcaaaagatagggagctcgtaccaatggagatctctgatgataaaaatacagtggacat tataagtgaaaatgaaatgaaggacatagcggtggccggagcaaacgatgaccagtgtccagtaaaaagtgaaattgtag attcagaagaacaaggtaaagacgcttgctgctcagactccctgcaagaattgcagcaaccggaatgtaccctgaggagg tccacacgaagaaagtctaaaccatcagatgcaaatgacaatttggagtataatttgcgaacgaacactctagtgaatcg agtgataagcgaaaggaagcgaaaagaacctaagttaccaaagccaaagtcgaaaccgcctcctcttagtaaatatagga gaaagacagctaatgcacgagaaaggtgtaggatggttgaaattaatcaggcttttgaagaacttagaaatgtgttgcca aatattgaagcagggcctgcaagtaaacttacaaaaattcatacgctgaggcttgctctaaattacatctcagcgttacg tcagactcttgggtacgatgacgacatgaactcagatgcgtcatcgatgcgatcgtctagtatttcatcttcatcgggtg acgaacagtgcttgagtccgtcggatggtgaacttagtattttgaattcagaagacagtagtgatctgctaagctcagat gacacagacatgataaattctgaggaacttttgtcggataaccttgacctcgtgcagcttgaccttgatggttgcacgga tttgttgttgagctga |
|
Protein
| Protein ID | pfu_aug1.0_7021.1_02366.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7021.1_02366.t1 MLKDHCRSKDRELVPMEISDDKNTVDIISENEMKDIAVAGANDDQCPVKSEIVDSEEQGKDACCSDSLQELQQPECTLRR STRRKSKPSDANDNLEYNLRTNTLVNRVISERKRKEPKLPKPKSKPPPLSKYRRKTANARERCRMVEINQAFEELRNVLP NIEAGPASKLTKIHTLRLALNYISALRQTLGYDDDMNSDASSMRSSSISSSSGDEQCLSPSDGELSILNSEDSSDLLSSD DTDMINSEELLSDNLDLVQLDLDGCTDLLLS |
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