Gene
| Gene Model ID | pfu_aug1.0_7025.1_09473 |
|---|---|
| Locus | scaffold7025.1 : 503 ... 15265 : - |
| To GenomeBrowser | scaffold7025.1:503..15265 |
| Genes list of scaffold | scaffold7025.1 |
| Synonym | pfu_aug2.0_213.1_10450 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7025.1_09473.t1 | 3 | 1 | TPR_8 | 637 | 659 | 1.6e-06 | 27.4 | 0.13 | 130.0 | 2.6 |
| pfu_aug1.0_7025.1_09473.t1 | 3 | 1 | TPR_2 | 638 | 668 | 1.8e-10 | 39.8 | 0.001 | 0.99 | 9.4 |
| pfu_aug1.0_7025.1_09473.t1 | 4 | 1 | TPR_1 | 638 | 659 | 3.5e-10 | 39.0 | 0.026 | 26.0 | 4.6 |
| pfu_aug1.0_7025.1_09473.t1 | 2 | 1 | TPR_11 | 638 | 698 | 5.4e-16 | 58.0 | 3.0e-09 | 3.0e-06 | 26.7 |
| pfu_aug1.0_7025.1_09473.t1 | 2 | 1 | TPR_12 | 639 | 697 | 6.1e-09 | 35.6 | 1.3e-08 | 1.3e-05 | 25.0 |
| pfu_aug1.0_7025.1_09473.t1 | 2 | 1 | TPR_19 | 647 | 696 | 6.2e-12 | 45.6 | 1.4e-07 | 0.00013 | 22.1 |
| pfu_aug1.0_7025.1_09473.t1 | 3 | 2 | TPR_2 | 671 | 697 | 1.8e-10 | 39.8 | 2.4e-06 | 0.0024 | 17.6 |
| pfu_aug1.0_7025.1_09473.t1 | 4 | 2 | TPR_1 | 672 | 697 | 3.5e-10 | 39.0 | 3.5e-06 | 0.0034 | 16.9 |
| pfu_aug1.0_7025.1_09473.t1 | 3 | 2 | TPR_8 | 676 | 697 | 1.6e-06 | 27.4 | 1.3e-05 | 0.013 | 15.2 |
| pfu_aug1.0_7025.1_09473.t1 | 2 | 2 | TPR_11 | 713 | 775 | 5.4e-16 | 58.0 | 7.5e-10 | 7.4e-07 | 28.7 |
| pfu_aug1.0_7025.1_09473.t1 | 3 | 3 | TPR_2 | 715 | 743 | 1.8e-10 | 39.8 | 0.0038 | 3.8 | 7.6 |
| pfu_aug1.0_7025.1_09473.t1 | 4 | 3 | TPR_1 | 715 | 743 | 3.5e-10 | 39.0 | 0.00056 | 0.55 | 9.9 |
| pfu_aug1.0_7025.1_09473.t1 | 2 | 2 | TPR_19 | 723 | 779 | 6.2e-12 | 45.6 | 1.0e-06 | 0.001 | 19.3 |
| pfu_aug1.0_7025.1_09473.t1 | 3 | 3 | TPR_8 | 723 | 743 | 1.6e-06 | 27.4 | 0.016 | 15.0 | 5.6 |
| pfu_aug1.0_7025.1_09473.t1 | 2 | 2 | TPR_12 | 726 | 768 | 6.1e-09 | 35.6 | 0.0033 | 3.3 | 7.7 |
| pfu_aug1.0_7025.1_09473.t1 | 4 | 4 | TPR_1 | 748 | 766 | 3.5e-10 | 39.0 | 0.081 | 80.0 | 3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7025.1_09473.t1 | gi|223647368|gb|ACN10442.1| | Tetratricopeptide repeat protein 15 [Salmo salar] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7025.1_09473.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7025.1_09473.t1 atgactgatcctaactcaagtagcttccttgaagatgagttccttgatgacagtcaatgccagcttcagcctcccggtgg ggaccacagcaccctggtccactcccctacaacagacaccctggactctgtggccctgggaccaagtgaggatctgagtg gtctagaggatgtcctgtcagaggaggtccatacagagcacctccagtctcctgacgctgggatagaaatcatggtagat accaaccaggacgattcagggtcaagggttggtgaggatggtcaaagcattagcctgtctgacgggatgtctggacaagg tcaatcagaaactattgatttgtttgggaagggaaccaaaccaaccgaaattgagttagccacagaagctcaaagtagga ataccaaggaagaggtcagcatcagtagctactttaacactggaccagatcaagatgatccttttggttctgttgtcaag agccctagcattccctctgatatgcagagtaaagttacaaaggagattaaggaggatgtgacgtacattcatcatgagcc cctggagtcaaggatatctcaggaggagccagagactgtggatttctcagtacccgagaacgaaggagattctaatgtaa tggaggcctccatgcacatcattgatgataaagaggactttgaatcattcactgcagaaagtggacctgcagacatggat gacctagggcttggagtttcaccttcaaacaaattcttgacagaaaggatgaacaaaatgcacataaatgataattctca aggtgaaaacactgatatatctaagtcagattatagtcgacaactgtcttcttccagcacacattccttaggaggtttcc aaagctctgcacagaatatgaccccacccattgccccctcccccatacaccaaccattccaaggagctccattctctgct tcccagttctctcccttctctacaccaactcaccaaccagtaatttctcacgagaccaagcaccaagagccaagtacagg tgtacctactgaaactgtgaatgaggaaaaatcagtagctttgccaactgttcctgaggtgagcagtcaaacacctttca actccctgcctctggagagtggagaagatcctttcactgccagtcttaacatgagtgattctgatcgacagtttgatgct tggataccgtcagacaacacccggcaactgcttgtaaccatggcaaccagtattcctggaacatttattcctactataga acagctcagctgcccaggaataattgtagatgaaccacagggtgatcctgtgcgagacttggtattcagatatatgggag aacaagaggccataaagcgtaagattctcacagtggatactgtaacacaagatgtagaaggactcaagaaactcattgga ggtggatgttatagatcagcagtggacctaacgtgtcaacttttgtctgcaggaggacaggggtcagggaaagtaggtca ggttacccaacacacacctcatacattacagctatggttcaccagactagttttgcttatgaagctacggctgtacagcg tggcagagtctgagttacaggcatttcagaacttagacacacctgatttgtactatgagttttatccccatatttaccct ggtaggaaaggatcaatggttccgtttggtatgagagtgctgcatgcagagctaccgcactatatgggaagatctacaga agcattggataggctgtattatatacttgctgttgtacaaaagacccttagcaacttggaaaaggggtattcagaggatg gtagtgcagttgaaatatctgatgaaagtagaaaagtgtccactggaatttggcaggaaagagagagaagagttctttat ataattggaaatacactactagctataagggattatgaggctgctatgacagtttatgatgtgctgatctccaaagatcc aacatgtaaagctgcccttctgagtggtatgggcaggctctatctacagatgggaaatgtagacaaagcaaaggattgtt tccaacatgcagagatactatcagacagcagcaataaaagtattctgtgtagaaactttgtcaacaaagggttagagtcg atgtgtatgaacaacttttcagaagcctaccagaattttaaatcagcagttgatgcagacccaacaaacacatctgctgt aaacaacatggctgcatgttcgctttacttgggaagattaatggatgccctaaagacattagagataatggttcatgacg acccacaaagaaatctacatgagggagttttgtttaacctatgtacactgtacgagctagaatcctcacgagctttacac aaaaaacaagcgttgttggaccttgtcagcagatataaaggagatggctttcctgtagcatgtcttaagatggcctga |
|
Protein
| Protein ID | pfu_aug1.0_7025.1_09473.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7025.1_09473.t1 MTDPNSSSFLEDEFLDDSQCQLQPPGGDHSTLVHSPTTDTLDSVALGPSEDLSGLEDVLSEEVHTEHLQSPDAGIEIMVD TNQDDSGSRVGEDGQSISLSDGMSGQGQSETIDLFGKGTKPTEIELATEAQSRNTKEEVSISSYFNTGPDQDDPFGSVVK SPSIPSDMQSKVTKEIKEDVTYIHHEPLESRISQEEPETVDFSVPENEGDSNVMEASMHIIDDKEDFESFTAESGPADMD DLGLGVSPSNKFLTERMNKMHINDNSQGENTDISKSDYSRQLSSSSTHSLGGFQSSAQNMTPPIAPSPIHQPFQGAPFSA SQFSPFSTPTHQPVISHETKHQEPSTGVPTETVNEEKSVALPTVPEVSSQTPFNSLPLESGEDPFTASLNMSDSDRQFDA WIPSDNTRQLLVTMATSIPGTFIPTIEQLSCPGIIVDEPQGDPVRDLVFRYMGEQEAIKRKILTVDTVTQDVEGLKKLIG GGCYRSAVDLTCQLLSAGGQGSGKVGQVTQHTPHTLQLWFTRLVLLMKLRLYSVAESELQAFQNLDTPDLYYEFYPHIYP GRKGSMVPFGMRVLHAELPHYMGRSTEALDRLYYILAVVQKTLSNLEKGYSEDGSAVEISDESRKVSTGIWQERERRVLY IIGNTLLAIRDYEAAMTVYDVLISKDPTCKAALLSGMGRLYLQMGNVDKAKDCFQHAEILSDSSNKSILCRNFVNKGLES MCMNNFSEAYQNFKSAVDADPTNTSAVNNMAACSLYLGRLMDALKTLEIMVHDDPQRNLHEGVLFNLCTLYELESSRALH KKQALLDLVSRYKGDGFPVACLKMA |
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