Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_70570.1_27651
Locus scaffold70570.1 : 1 ... 3713 : -
To GenomeBrowser scaffold70570.1:1..3713
Genes list of scaffold scaffold70570.1
Synonym pfu_aug2.0_887.1_24490

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_70570.1_27651.t1 1 1 TAFH 1 58 1.1e-18 66.5 2.0e-22 1.5e-18 66.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_70570.1_27651.t1 gi|189069148|dbj|BAG35486.1| unnamed protein product [Homo sapiens] 4.0e-33

Transcript
Transcript IDpfu_aug1.0_70570.1_27651.t1
Definition-
>pfu_aug1.0_70570.1_27651.t1
aactctcatttatccattgaggaattccatgccaaacttcaagaggccaccaactttccactacgaccatttgttatacc
attcttgaaggccaacctgccattactacagagggagttattacactgtgctcgcatggccaaacagagtccccagcagt
acctagctcataacgagcacatcttatttgatgccactacatcctcccctacagaatctcatgatataaacgaaaacggc
aaacggagatcacctgacag

Protein
Protein IDpfu_aug1.0_70570.1_27651.t1
Definition-
>pfu_aug1.0_70570.1_27651.t1
NSHLSIEEFHAKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARMAKQSPQQYLAHNEHILFDATTSSPTESHDINENG
KRRSPD

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