Gene
| Gene Model ID | pfu_aug1.0_7120.1_09493 |
|---|---|
| Locus | scaffold7120.1 : 2636 ... 7929 : + |
| To GenomeBrowser | scaffold7120.1:2636..7929 |
| Genes list of scaffold | scaffold7120.1 |
| Synonym | pfu_aug2.0_12.1_06744 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7120.1_09493.t1 | 1 | 1 | Njmu-R1 | 41 | 166 | 1.4e-27 | 96.4 | 1.1e-31 | 1.6e-27 | 96.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7120.1_09493.t1 | gi|213385313|ref|NP_001132978.1| | uncharacterized protein LOC303764 [Rattus norvegicus] | 2.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7120.1_09493.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7120.1_09493.t1 atgagacaaaacttaaatttccgatttccgaagttcacaaaaacctgtaatttgtctgatatactgcgtcagatggacaa cgagggaaaggacgcaggatcaacggcaagtagcgtggatatgctgctcgatctaactgatgattcgagcaggaaagtta tttccttgaaaatcagcgacagtgatgttaaattttcatgtgaaggttgcacaaagttttgtgaagactgggggaagcta ctacacacggcaaacataagggacccaggccagatcagacaaatcatagaagctggtaaagtcaagtatatacaaagtat caatacactgaagagacttctcatgcaagcagagaatgattactatgccttgtacagggcatatgtcttcctcaagaatt ctgggaatagtgaaatacttttacattgtgcacacttggacaaaatacctgaagtgagcagtgtttttaaatcgttagag gaattcatgtacgagacaaaagttgtttcctga |
|
Protein
| Protein ID | pfu_aug1.0_7120.1_09493.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7120.1_09493.t1 MRQNLNFRFPKFTKTCNLSDILRQMDNEGKDAGSTASSVDMLLDLTDDSSRKVISLKISDSDVKFSCEGCTKFCEDWGKL LHTANIRDPGQIRQIIEAGKVKYIQSINTLKRLLMQAENDYYALYRAYVFLKNSGNSEILLHCAHLDKIPEVSSVFKSLE EFMYETKVVS |
|