Gene
| Gene Model ID | pfu_aug1.0_7120.1_09494 |
|---|---|
| Locus | scaffold7120.1 : 13363 ... 14935 : - |
| To GenomeBrowser | scaffold7120.1:13363..14935 |
| Genes list of scaffold | scaffold7120.1 |
| Synonym | pfu_aug2.0_12.1_06745 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7120.1_09494.t1 | 1 | 1 | Jun | 23 | 219 | 1.0e-37 | 130.1 | 7.20001e-41 | 1.5e-37 | 129.5 |
| pfu_aug1.0_7120.1_09494.t1 | 1 | 1 | bZIP_Maf | 226 | 289 | 5.5e-07 | 29.8 | 2.6e-10 | 5.5e-07 | 29.8 |
| pfu_aug1.0_7120.1_09494.t1 | 1 | 1 | bZIP_1 | 228 | 290 | 8.6e-20 | 70.4 | 4.1e-23 | 8.6e-20 | 70.4 |
| pfu_aug1.0_7120.1_09494.t1 | 1 | 1 | bZIP_2 | 234 | 286 | 1.5e-06 | 27.8 | 7.2e-10 | 1.5e-06 | 27.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7120.1_09494.t1 | gi|325977003|gb|ADZ48236.1| | AP-1 protein [Ruditapes philippinarum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7120.1_09494.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7120.1_09494.t1 atggaagcggtagatcggaccttctatccggacgaaccccaggatctgaaaattgaaaataaccaagtgaaccagttaaa acgtaaaatgacattggactttaactccggtggcaaaacaaaacagcagaaagtggctcaaatgttggcttcgcctgact tgaacatgcttaaattggcttcgcctgagttggagaaaatgatcatccaggctaacgggtttgttacgacgactccgacc cctacacagttcatatttccgaagtatgtgaccgaggagcaggagcagtacgcccgggggttcgtggaagcactagcaga aatccacggtaagcagcaagttttacccgtgccccagggcgcgattccaccccctcagcagaagcccgtggctctcacaa ggcctcgggatgactcctcggacgatgattctaactcgtcatttcatcactcaagcgatccagttgtttcactggcaact acaacaaccttaccggggggattggttactatcaacccagcagtttcgctctttcaaagtgcagcaatgaacagaacttt agcgcaaaactcactcacttctctcacaaacgtccgtacctctcaagtgaaagaagaaccacaaactgtaccgtgtgtga attccaatacccctcctctatcaccgattgatatggacaatcaagaaaaaattaaactggaacgtaaacgagcaaggaat agggtcgcagcgcgaaaatgtagaacgcgaaaattggaacgcattgcaagacttgaggaacgtgtcgcagaactgaaagg acaaaatagtgacttggcatctacagcaagtaacttgcgagatcaagtgtgcaaattaaagcagcaaataattgaacatg tcaacagtggatgtaacatcatgctttcaactaatattcaactgtgctga |
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Protein
| Protein ID | pfu_aug1.0_7120.1_09494.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7120.1_09494.t1 MEAVDRTFYPDEPQDLKIENNQVNQLKRKMTLDFNSGGKTKQQKVAQMLASPDLNMLKLASPELEKMIIQANGFVTTTPT PTQFIFPKYVTEEQEQYARGFVEALAEIHGKQQVLPVPQGAIPPPQQKPVALTRPRDDSSDDDSNSSFHHSSDPVVSLAT TTTLPGGLVTINPAVSLFQSAAMNRTLAQNSLTSLTNVRTSQVKEEPQTVPCVNSNTPPLSPIDMDNQEKIKLERKRARN RVAARKCRTRKLERIARLEERVAELKGQNSDLASTASNLRDQVCKLKQQIIEHVNSGCNIMLSTNIQLC |
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