Gene
| Gene Model ID | pfu_aug1.0_7124.1_45586 |
|---|---|
| Locus | scaffold7124.1 : 49016 ... 60318 : + |
| To GenomeBrowser | scaffold7124.1:49016..60318 |
| Genes list of scaffold | scaffold7124.1 |
| Synonym | pfu_aug2.0_61.1_03545 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7124.1_45586.t1 | 1 | 1 | Homeobox | 166 | 222 | 3.7e-22 | 77.6 | 1.0e-25 | 7.5e-22 | 76.7 |
| pfu_aug1.0_7124.1_45586.t1 | 1 | 1 | OAR | 301 | 319 | 3.0e-06 | 26.5 | 8.5e-10 | 6.3e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7124.1_45586.t1 | gi|72046825|ref|XP_781184.1| | PREDICTED: visual system homeobox 2 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7124.1_45586.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7124.1_45586.t1 atgcaaccgcattataacggaatgaacaatggactttatccgcagatggcgaattcacagactcagaaatcatcttttgg aattcatgaaattcttggtttaactgctccaacatgtcgacagaatccaagtcccgacatcctggataatctcgggatca catcaccatccagcggaaacaacaatatgtatggactaaatcccggaactgttaacggacagtatctacccgcagaacag caatatcagaatttcttcagggatcattcgcttcagcaacaaagttccacgttttatccttggaaatatgaccccgtgaa tcaaattcctacaaattctaactcagtaataaacaatcaagtacccagtagatattctgacggcatcggattcggaataa aagctcctatactggaagaagccacaactcgaccagagtgtgcacaactcgataaaacggaaacgaactcttcatcaaaa aagaacaaaaagagacgtcgtcataggacgatattcaccagctatcaggtggacgagttggagaagacgtttaaggaggc acactaccctgatctttatgccagagaggtgttggctctcaaaatagatctaccggaagatagaatacaggtgtggttcc aaaaccgcagagccaaatggcgcaaaacagagaaaacttgggggaaaagcagcatcatggcggagtacggattgtatggt gccatggtccggcatgcactaccacttcctgatgcgatagtgaagagtgcagaaaaggggatagacaaatcatccgctcc gtggcttctaggaatgcacaaaaagtcgatcgaagcatccaagaaaatgaaggaggagggaatcatcgatggatcggaga tgaaaggatgtgtaaaagatgacttccgctcggaaagcattgcggctttacgcgcgaaagcccagcaacacagtgcccgg atgttggaagcgcttggcagcgagggtaaagtagacgacaacggaagtgaacattcatttgacagttctttcttctcgga tgcagacgatataggcagtgatcatgtcagaaattaa |
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Protein
| Protein ID | pfu_aug1.0_7124.1_45586.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7124.1_45586.t1 MQPHYNGMNNGLYPQMANSQTQKSSFGIHEILGLTAPTCRQNPSPDILDNLGITSPSSGNNNMYGLNPGTVNGQYLPAEQ QYQNFFRDHSLQQQSSTFYPWKYDPVNQIPTNSNSVINNQVPSRYSDGIGFGIKAPILEEATTRPECAQLDKTETNSSSK KNKKRRRHRTIFTSYQVDELEKTFKEAHYPDLYAREVLALKIDLPEDRIQVWFQNRRAKWRKTEKTWGKSSIMAEYGLYG AMVRHALPLPDAIVKSAEKGIDKSSAPWLLGMHKKSIEASKKMKEEGIIDGSEMKGCVKDDFRSESIAALRAKAQQHSAR MLEALGSEGKVDDNGSEHSFDSSFFSDADDIGSDHVRN |
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