Gene
| Gene Model ID | pfu_aug1.0_714.1_07640 |
|---|---|
| Locus | scaffold714.1 : 71345 ... 77895 : - |
| To GenomeBrowser | scaffold714.1:71345..77895 |
| Genes list of scaffold | scaffold714.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_714.1_07640.t1 | 2 | 1 | Collagen | 64 | 118 | 4.1e-16 | 58.2 | 2.7e-12 | 2.0e-08 | 33.6 |
| pfu_aug1.0_714.1_07640.t1 | 2 | 2 | Collagen | 97 | 153 | 4.1e-16 | 58.2 | 1.2e-13 | 8.8e-10 | 37.9 |
| pfu_aug1.0_714.1_07640.t1 | 1 | 1 | C1q | 161 | 282 | 3.1e-23 | 82.1 | 5.7e-27 | 4.2e-23 | 81.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_714.1_07640.t1 | gi|291239061|ref|XP_002739445.1| | PREDICTED: complement C1q subcomponent subunit B-like [Saccoglossus kowalevskii] | 6.0e-29 |
Transcript
| Transcript ID | pfu_aug1.0_714.1_07640.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_714.1_07640.t1 atgcgcacactaccggttttacagaaaactgggacgctcatttgtcaatataattgtgatctaaaatatcttacttccat tgcgtttcttaaactcatcaaatactattttaattggcggcgaatttgcctatcatacaccaagaacaacatgtactata agaagggggagtatgatgcctgttgtagagggttaccaggagtgccaggagcgtccgggggtccggggagcaatggctta aacggcatgaacggagagaaaggtcagaagggggacaaaggagatgtaggccccattggtagtcaaggtagtacaggtcc tgaaggatcaaagggagacaagggaaggcggggtaagaaaggtgtgaaaggagacgatggtcctgtcggtattgtaggtg tcccgggacccagaggaccgctagggccaaaaggaatcaaaggccaaaaaggacaggctgccctaccaccaaccagggtg gcattctctgcatgccgcaccaaagctctagggccggtcacagaggacacgaccattacgtttgacaaggtgcttattaa ccagggagagaactttgacgtctatacctctcactttgtggccaagatcaacggcacatacctcttcatcgcacacgttc taagcagcactgacaatgatgcttacgcttggctcacgattaacaatcgaccactggtgccgatgcatggtgaccatcgg tctggttacggcactggcagtaacacaattatatatcacttggtgcaggaggaccatgtgtgggtacagctgatgaagaa ttcctctcttcttaatgacttctccactttttctggttaccttatatatagggactga |
|
Protein
| Protein ID | pfu_aug1.0_714.1_07640.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_714.1_07640.t1 MRTLPVLQKTGTLICQYNCDLKYLTSIAFLKLIKYYFNWRRICLSYTKNNMYYKKGEYDACCRGLPGVPGASGGPGSNGL NGMNGEKGQKGDKGDVGPIGSQGSTGPEGSKGDKGRRGKKGVKGDDGPVGIVGVPGPRGPLGPKGIKGQKGQAALPPTRV AFSACRTKALGPVTEDTTITFDKVLINQGENFDVYTSHFVAKINGTYLFIAHVLSSTDNDAYAWLTINNRPLVPMHGDHR SGYGTGSNTIIYHLVQEDHVWVQLMKNSSLLNDFSTFSGYLIYRD |
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