Gene
| Gene Model ID | pfu_aug1.0_714.1_07641 |
|---|---|
| Locus | scaffold714.1 : 79396 ... 91551 : + |
| To GenomeBrowser | scaffold714.1:79396..91551 |
| Genes list of scaffold | scaffold714.1 |
| Synonym | pfu_aug2.0_5224.1_16085 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_714.1_07641.t1 | 2 | 1 | DNA_ligase_A_N | 34 | 136 | 4.3e-37 | 127.6 | 3.0e-29 | 9.0e-26 | 90.7 |
| pfu_aug1.0_714.1_07641.t1 | 2 | 2 | DNA_ligase_A_N | 131 | 177 | 4.3e-37 | 127.6 | 4.0e-13 | 1.2e-09 | 38.2 |
| pfu_aug1.0_714.1_07641.t1 | 1 | 1 | DNA_ligase_A_M | 255 | 459 | 0.0 | 218.8 | 0.0 | 0.0 | 218.2 |
| pfu_aug1.0_714.1_07641.t1 | 1 | 1 | DNA_ligase_A_C | 484 | 595 | 9.6e-25 | 86.8 | 6.3e-28 | 1.9e-24 | 85.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_714.1_07641.t1 | gi|260801006|ref|XP_002595387.1| | hypothetical protein BRAFLDRAFT_69217 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_714.1_07641.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_714.1_07641.t1 atgagctcaggaagtaagaaggaacagggtactggattcaatcctgctaaaacaaagtacaatcctattgatgatgcctg ctggaaacagaaagaaaaagtaccataccttgctcttgccaaaacatttgaagcgatcgaaaacatatctggaaggttga aaaccatagaaattttgtgtaactttttccgctctgtgattgttctgagccctgatgatctactgaactgtgtataccta tgtctgaacaagttggccccagcatatgagggtgtcgagcttggtataggggaaacggtactgatgaaggctatagctca ggccacaggaagaagcatggacaaaattaaagcagatgcacatgaaaagggtgacctcggaattgtggcggagtcgatga ccaagaagatagagaagataaaggggatgtttgtggcatgtagggagtgtgaggccaggtatctgatacggtcactcggc ggtaaactgaggataggattagcagaacagagtgttctaacagcactaggaaatgctgtgttcctaacacctccatcaac agattttcccccagaggtactagatgctgggaaaggacttggtcctgatactttaaagaagaaaatggaagaatcgtctc ttattataaaaaccacatactgtgagtgtccaaattatggtgccattattcctgtcttgattaaagaaggaattgatgaa cttcagaagaaatgtaaacttactccaggtgttcctctgaaacccatgttggcccatccaactaaaggtataagtgaagt actcaagagatttgaagatgctgaatttacctgtgaatacaagtatgatggagaaagggcacagatccatatcttagaaa atggcaaagttcatatctacagtcgtaattctgaggataatacatcaaaatatcccgatataatagcaaggattcctaag gtgttaaaagacagtgttaaatcctgtgtgttagattcagaagccgtggcgtgggacgcagagaaaaaacaaatccaacc attccaagtacttagtcataggaagagaaaggatgctgatgcttcagagattaagatccatgtatgtgtgtatgcctttg atctactgtaccttaatggtgaatctctagtcaaggagccgttcaggcggaggcgagatttactgaggtcttcatttgag gaggtggaaggagaatttatgttcgccaagtctatgatctcagcaaatacagaggagattggagaatttttggaagaatc aataaaaggtaactgtgaaggattaatggtaaagacattggacaaagatgcaacatatgaaatagccaaaaggtcacaca attggttaaaggttaagaaggattatttagagggagtaggagatacattagacgtggtggtgatgggaggttacataggg acaggaaaacgtacaggacgatatggaggattcttactggcctgttatgacgaggagaatgaagaatttcagtccatctg caagattggcacaggatttaaggatgaagatctggagactcacgctaatttcttcaaggagcacatcacagagaaaccta agcagtattaccgttacgatacctccatcgccccagatcattggtttgatgctgtacaggtgtgggaaatcaaatgtgca gatctgtccatctcaccaacacacatggctgccgcaggactggttgatccagagaaaggaatttccctaagatttcctag atttctgagaatacgagacgacaaaaagcctgaggaggccacatcagcttcccaggtggcagagatgtacaagagtcagc agcagatccagaatcagaacatggacagtggtaaaaacgctcaggatgatgatgaattttattga |
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Protein
| Protein ID | pfu_aug1.0_714.1_07641.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_714.1_07641.t1 MSSGSKKEQGTGFNPAKTKYNPIDDACWKQKEKVPYLALAKTFEAIENISGRLKTIEILCNFFRSVIVLSPDDLLNCVYL CLNKLAPAYEGVELGIGETVLMKAIAQATGRSMDKIKADAHEKGDLGIVAESMTKKIEKIKGMFVACRECEARYLIRSLG GKLRIGLAEQSVLTALGNAVFLTPPSTDFPPEVLDAGKGLGPDTLKKKMEESSLIIKTTYCECPNYGAIIPVLIKEGIDE LQKKCKLTPGVPLKPMLAHPTKGISEVLKRFEDAEFTCEYKYDGERAQIHILENGKVHIYSRNSEDNTSKYPDIIARIPK VLKDSVKSCVLDSEAVAWDAEKKQIQPFQVLSHRKRKDADASEIKIHVCVYAFDLLYLNGESLVKEPFRRRRDLLRSSFE EVEGEFMFAKSMISANTEEIGEFLEESIKGNCEGLMVKTLDKDATYEIAKRSHNWLKVKKDYLEGVGDTLDVVVMGGYIG TGKRTGRYGGFLLACYDEENEEFQSICKIGTGFKDEDLETHANFFKEHITEKPKQYYRYDTSIAPDHWFDAVQVWEIKCA DLSISPTHMAAAGLVDPEKGISLRFPRFLRIRDDKKPEEATSASQVAEMYKSQQQIQNQNMDSGKNAQDDDEFY |
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