Gene
| Gene Model ID | pfu_aug1.0_7146.1_52898 |
|---|---|
| Locus | scaffold7146.1 : 43626 ... 56107 : + |
| To GenomeBrowser | scaffold7146.1:43626..56107 |
| Genes list of scaffold | scaffold7146.1 |
| Synonym | pfu_aug2.0_744.1_14520 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7146.1_52898.t1 | 3 | 1 | Paf1 | 3 | 44 | 5.3e-06 | 25.4 | 9.0e-10 | 1.3e-05 | 24.1 |
| pfu_aug1.0_7146.1_52898.t1 | 3 | 2 | Paf1 | 44 | 152 | 5.3e-06 | 25.4 | 1.9e-06 | 0.028 | 13.1 |
| pfu_aug1.0_7146.1_52898.t1 | 3 | 3 | Paf1 | 180 | 198 | 5.3e-06 | 25.4 | 0.51 | 7500.0 | -4.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7146.1_52898.t1 | gi|340728168|ref|XP_003402400.1| | PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X1 [Bombus terrestris] | 2.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7146.1_52898.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7146.1_52898.t1 atgtcgcatattttcccaaatgaaaagttatggaagcatccatttgctcaggttatatttgattctgatcccgcacctaa aggccgatcccagccagcacagatggaggaaatgtcacaggctatgatcagggtgcgattaagtaaaagaagaaagactg gaaatgtcagcaaatccaggttacttgtaaagcaccgagatctgaatgagagggaagttggtgctcaggaatccagaatg ctgatgcttgaaccacaacaagaggaggaagaagaagaagttcaagatgaacagtttggagataatctcgatatggatca gttcaagagtgccagtgaagatgaaggaagtgttaagtcgggaggaagccgacggagtcgcagcagaagtcgaagtggaa gtaggtcaggaagtggtagcaggagcggtagtggaagtagaagtaggtcacgcagcggtagccgatccaggagtcgtagt agaagtaaaagtggtagtagaagtaggagtggaagcaggagtaggagcccgtctccggctaaaagtggaagcagcagcga gagcgagagtgaaccagagaaagacaagggcaagaaagacgaggaagaaatctttggttcggctagcagctcggacgaag actga |
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Protein
| Protein ID | pfu_aug1.0_7146.1_52898.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7146.1_52898.t1 MSHIFPNEKLWKHPFAQVIFDSDPAPKGRSQPAQMEEMSQAMIRVRLSKRRKTGNVSKSRLLVKHRDLNEREVGAQESRM LMLEPQQEEEEEEVQDEQFGDNLDMDQFKSASEDEGSVKSGGSRRSRSRSRSGSRSGSGSRSGSGSRSRSRSGSRSRSRS RSKSGSRSRSGSRSRSPSPAKSGSSSESESEPEKDKGKKDEEEIFGSASSSDED |
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