Gene
Gene Model ID | pfu_aug1.0_7146.1_52898 |
---|---|
Locus | scaffold7146.1 : 43626 ... 56107 : + |
To GenomeBrowser | scaffold7146.1:43626..56107 |
Genes list of scaffold | scaffold7146.1 |
Synonym | pfu_aug2.0_744.1_14520 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7146.1_52898.t1 | 3 | 1 | Paf1 | 3 | 44 | 5.3e-06 | 25.4 | 9.0e-10 | 1.3e-05 | 24.1 |
pfu_aug1.0_7146.1_52898.t1 | 3 | 2 | Paf1 | 44 | 152 | 5.3e-06 | 25.4 | 1.9e-06 | 0.028 | 13.1 |
pfu_aug1.0_7146.1_52898.t1 | 3 | 3 | Paf1 | 180 | 198 | 5.3e-06 | 25.4 | 0.51 | 7500.0 | -4.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7146.1_52898.t1 | gi|340728168|ref|XP_003402400.1| | PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X1 [Bombus terrestris] | 2.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 2 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_7146.1_52898.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7146.1_52898.t1 atgtcgcatattttcccaaatgaaaagttatggaagcatccatttgctcaggttatatttgattctgatcccgcacctaa aggccgatcccagccagcacagatggaggaaatgtcacaggctatgatcagggtgcgattaagtaaaagaagaaagactg gaaatgtcagcaaatccaggttacttgtaaagcaccgagatctgaatgagagggaagttggtgctcaggaatccagaatg ctgatgcttgaaccacaacaagaggaggaagaagaagaagttcaagatgaacagtttggagataatctcgatatggatca gttcaagagtgccagtgaagatgaaggaagtgttaagtcgggaggaagccgacggagtcgcagcagaagtcgaagtggaa gtaggtcaggaagtggtagcaggagcggtagtggaagtagaagtaggtcacgcagcggtagccgatccaggagtcgtagt agaagtaaaagtggtagtagaagtaggagtggaagcaggagtaggagcccgtctccggctaaaagtggaagcagcagcga gagcgagagtgaaccagagaaagacaagggcaagaaagacgaggaagaaatctttggttcggctagcagctcggacgaag actga |
Protein
Protein ID | pfu_aug1.0_7146.1_52898.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7146.1_52898.t1 MSHIFPNEKLWKHPFAQVIFDSDPAPKGRSQPAQMEEMSQAMIRVRLSKRRKTGNVSKSRLLVKHRDLNEREVGAQESRM LMLEPQQEEEEEEVQDEQFGDNLDMDQFKSASEDEGSVKSGGSRRSRSRSRSGSRSGSGSRSGSGSRSRSRSGSRSRSRS RSKSGSRSRSGSRSRSPSPAKSGSSSESESEPEKDKGKKDEEEIFGSASSSDED |