Gene
| Gene Model ID | pfu_aug1.0_7169.1_60196 |
|---|---|
| Locus | scaffold7169.1 : 2400 ... 26855 : - |
| To GenomeBrowser | scaffold7169.1:2400..26855 |
| Genes list of scaffold | scaffold7169.1 |
| Synonym | pfu_aug2.0_3812.1_09230 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7169.1_60196.t1 | 1 | 1 | RVT_1 | 1 | 116 | 4.7e-19 | 68.5 | 5.5e-22 | 1.0e-18 | 67.5 |
| pfu_aug1.0_7169.1_60196.t1 | 2 | 1 | EF-hand_7 | 226 | 267 | 3.8e-14 | 52.5 | 5.9e-07 | 0.0011 | 19.0 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 1 | EF-hand_8 | 230 | 267 | 2.6e-14 | 52.5 | 1.1e-05 | 0.021 | 14.4 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 1 | EF-hand_1 | 242 | 269 | 1.1e-11 | 43.1 | 1.5e-07 | 0.00027 | 20.0 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 1 | EF-hand_6 | 245 | 269 | 2.9e-09 | 36.0 | 0.00044 | 0.82 | 9.7 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 2 | EF-hand_8 | 273 | 297 | 2.6e-14 | 52.5 | 4.1e-05 | 0.076 | 12.6 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 2 | EF-hand_1 | 279 | 306 | 1.1e-11 | 43.1 | 7.3e-07 | 0.0013 | 17.8 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 2 | EF-hand_6 | 280 | 308 | 2.9e-09 | 36.0 | 4.1e-08 | 7.6e-05 | 22.2 |
| pfu_aug1.0_7169.1_60196.t1 | 2 | 2 | EF-hand_7 | 280 | 340 | 3.8e-14 | 52.5 | 4.6e-12 | 8.5e-09 | 35.4 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 3 | EF-hand_8 | 292 | 338 | 2.6e-14 | 52.5 | 2.2e-13 | 4.1e-10 | 39.1 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 3 | EF-hand_6 | 316 | 341 | 2.9e-09 | 36.0 | 0.00025 | 0.46 | 10.5 |
| pfu_aug1.0_7169.1_60196.t1 | 3 | 3 | EF-hand_1 | 316 | 342 | 1.1e-11 | 43.1 | 2.5e-07 | 0.00046 | 19.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7169.1_60196.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7169.1_60196.t1 atggaaagatacgggttaagcaaaaggatcatcaactggacgcagaacctccttctcaacagatcacagagagtaacagt gaacggacaatcatcatcggtgcatgaggtcacatccggtatcccgcaggggagtgtggtcgagccgatcatgtttgtac tctacatcaatgacatgccggacatcgttgaagctacaacatatctatttgcagatgataccaatatacatcaacaaact aaaagtaaccagaacaagacacgccttcaagaggatcttgacgctctgcaaaaatggtcagatacctggttattgaaatt tcatccaaataaatgtaaagtggtatctatatctacaaatgggtcgaaatcatcatcaaatagtccttactatctttatg acaatgatggaaatgaaattaatctcgaaaaatcagaggggggaaaggatattggtgtgatggtggatgaaaacttaaat ttcgaaaatcacatgcaaccacagattaacaaggcaaacagcatcatgggtcttatccgaagaacatacacatatttaga tgaaaaaagcttcaaatacctcttccaagctttagtcagacaacatcttgagtatgccgcagcggaccagctgctgggac tagaaatatatcattttagtccccggaaaaaagatgaaacgaaaatagcactgcgtgcgcttggatttgagccgaagaaa gaggaaattaagaagatggtggctgatgtggataaagacggatcagaaattctggacttcaatgatttcttgcacataat gacgatgaaaatgacaggcaaagattcaaaggaagatatacagaaagctttcaagttatttgatgacgatgattccggga aaataaacaggaaaaagttaaagaacgctgccaaggatctgggattggaattaacaaaacagcaacttcaggaacttatt gatgtggcggatctagacaaagacggcgaggttaacgaaagagaattcatcaatatcatcatgaagagaaagaatttgta ctaa |
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Protein
| Protein ID | pfu_aug1.0_7169.1_60196.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7169.1_60196.t1 MERYGLSKRIINWTQNLLLNRSQRVTVNGQSSSVHEVTSGIPQGSVVEPIMFVLYINDMPDIVEATTYLFADDTNIHQQT KSNQNKTRLQEDLDALQKWSDTWLLKFHPNKCKVVSISTNGSKSSSNSPYYLYDNDGNEINLEKSEGGKDIGVMVDENLN FENHMQPQINKANSIMGLIRRTYTYLDEKSFKYLFQALVRQHLEYAAADQLLGLEIYHFSPRKKDETKIALRALGFEPKK EEIKKMVADVDKDGSEILDFNDFLHIMTMKMTGKDSKEDIQKAFKLFDDDDSGKINRKKLKNAAKDLGLELTKQQLQELI DVADLDKDGEVNEREFINIIMKRKNLY |
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